RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 KLHL28Q9NXS3 571 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 UVRAGQ9P2Y5 699 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SHPKQ9UHJ6 478 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 C3orf18Q9UK00 162 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SCML1Q9UN30 329 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PIGLQ9Y2B2 252 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SLC17A4Q9Y2C5 497 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 POLDIP2Q9Y2S7 368 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 COQ4Q9Y3A0 265 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 F11RQ9Y624 299 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SOX21Q9Y651 276 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM14AQ9Y6G1 99 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TACC2O95359 2948 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 MAP1AP78559 2803 aaPredicted RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 hCG_1818297A0A087WSY0 165 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 A0A087X0T9 212 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 IGHV1-45A0A0A0MS14 117 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 IGHV3-15A0A0B4J1V0 119 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 IGKV1D-13A0A0B4J2D9 117 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 IGHV3-66A0A0C4DH42 116 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 LOC100653049A0A140TA62 436 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 A0A1B0GWJ7 208 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 PVALEFA0A1B0GWK0 134 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 A0A1B0GX78 115 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 HEATR9A2RTY3 570 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 NCF1BA6NI72 391 aaPredicted RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 COLCA2A8K830 154 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 NCF1CA8MVU1 366 aaPredicted RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 C9JVG2 144 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 LYNX1G3V0Z9 82 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 H0YGG7 62 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 GOLGA8MH3BSY2 632 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 H7C0C1 242 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 UBXN8O00124 270 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 PSMD11O00231 422 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 GOSR2O14653 212 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 NDC80O14777 642 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CLOCKO15516 846 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 TIMM8AO60220 97 aaPredicted RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 SOX15O60248 233 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 STX10O60499 249 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 SNNO75324 88 aaPredicted RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 POP7O75817 140 aaKnown RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CBR3O75828 277 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 KLF7O75840 302 aaPredicted RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 KRT34O76011 436 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 SRP72O76094 671 aaKnown RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 OR7A10O76100 309 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 MYO1DO94832 1006 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CDK14O94921 469 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 RAB3DO95716 219 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CLIC3O95833 236 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 AGTP01019 485 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 C1QCP02747 245 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CLPSP04118 112 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 HLA-DPB1P04440 258 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 GYPCP04921 128 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CALB1P05937 261 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CD5P06127 495 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 BCHEP06276 602 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 C2P06681 752 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CT62P0C5K7 136 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 FAM228BP0C875 321 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 TLX1NBP0CAT3 122 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 PABPC4LP0CB38 370 aaKnown RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 SMIM10L1P0DMW3 83 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 IGHV3-43DP0DP04 118 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 IGKV1-13P0DP09 117 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 LYNX1P0DP58 116 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CPMP14384 443 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 OMGP23515 440 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 DTYMKP23919 212 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 MSNP26038 577 aaKnown RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 PAX6P26367 422 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CD82P27701 267 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 LOXP28300 417 aaPredicted RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 IMPA1P29218 277 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CCR7P32248 378 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 IFNA8P32881 189 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 MAS1LP35410 378 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 SERPINB5P36952 375 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 FDFT1P37268 417 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 ACAA2P42765 397 aaKnown RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 NSG1P42857 185 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 SLC1A2P43004 574 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 ATP5OP48047 213 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CCNG1P51959 295 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 UGT2B15P54855 530 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 AIF1P55008 147 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 RPS15P62841 145 aaKnown RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 CACNG7P62955 275 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 ACTG1P63261 375 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 ACTG2P63267 376 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 BASP1P80723 227 aaKnown RBP0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 XIAPP98170 497 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 DEFA6Q01524 100 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 PRKCDQ05655 676 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 RAD51Q06609 339 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 FOXF1Q12946 379 aa0.62□□□□□ -2.31
SMARCB1-209ENST00000635578 MOBPQ13875 183 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms