RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 RAB30Q15771 203 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 TMPRSS5Q9H3S3 457 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 ZNF319Q9P2F9 582 aa11.06□□□□□ -0.64
LIG1-221ENST00000613670 MRPS17Q9Y2R5 130 aaKnown RBP11.06□□□□□ -0.64
LIG1-221ENST00000613670 A0A0A6YYD4 124 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 GEMIN2O14893 280 aaKnown RBP11.05□□□□□ -0.64
LIG1-221ENST00000613670 HLA-GP17693 338 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 EIF1P41567 113 aaKnown RBP11.05□□□□□ -0.64
LIG1-221ENST00000613670 ELLP55199 621 aaPredicted RBP11.05□□□□□ -0.64
LIG1-221ENST00000613670 TLE4Q04727 773 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 PIGYQ3MUY2 71 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 CDCP2Q5VXM1 449 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 ZNF429Q86V71 674 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 OR2C3Q8N628 320 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 CYYR1Q96J86 154 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 SLC2A9Q9NRM0 540 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 WSB1Q9Y6I7 421 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 CEBPZOSA8MTT3 80 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 F8VVB4 439 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 F8VWA3 439 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 ZNF528Q3MIS6 628 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 OR2T2Q6IF00 324 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 ZNF774Q6NX45 483 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 MRPL21Q7Z2W9 205 aaKnown RBP11.05□□□□□ -0.64
LIG1-221ENST00000613670 UBALD1Q8TB05 177 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 SLC25A43Q8WUT9 341 aaPredicted RBP11.05□□□□□ -0.64
LIG1-221ENST00000613670 OR5B12Q96R08 314 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 UCN2Q96RP3 112 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 PQLC2LA1A4F0 135 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 CD300LBA8K4G0 201 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 LDLRAD4O15165 306 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 OTX2P32243 289 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 LBX1P52954 281 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 GAB2Q9UQC2 676 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 CLDN16Q9Y5I7 305 aa11.05□□□□□ -0.64
LIG1-221ENST00000613670 SMCO3A2RU48 225 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 TSTD3H0UI37 97 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 DEDDO75618 318 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 RAB1AP62820 205 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 HABP2Q14520 560 aaPredicted RBP11.04□□□□□ -0.64
LIG1-221ENST00000613670 ADIRFQ15847 76 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 ANKRD37Q7Z713 158 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 OSR2Q8N2R0 312 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 SPSB2Q99619 263 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 RARRES2Q99969 163 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 SUCNR1Q9BXA5 334 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 GSN-AS1Q9NRJ2 163 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 MYOTQ9UBF9 498 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 MCTS1Q9ULC4 181 aaKnown RBP11.04□□□□□ -0.64
LIG1-221ENST00000613670 TPRP12270 2363 aaKnown RBP11.04□□□□□ -0.64
LIG1-221ENST00000613670 BCAT2O15382 392 aaPredicted RBP11.04□□□□□ -0.64
LIG1-221ENST00000613670 SCAF4O95104 1147 aaKnown RBP11.04□□□□□ -0.64
LIG1-221ENST00000613670 P04436 131 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 FABP4P15090 132 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 TCN2P20062 427 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 KLK2P20151 261 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 SUMO3P55854 103 aaPredicted RBP11.04□□□□□ -0.64
LIG1-221ENST00000613670 SMAD4Q13485 552 aaKnown RBP11.04□□□□□ -0.64
LIG1-221ENST00000613670 UBE2V2Q15819 145 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 DNM1P46Q6ZS02 220 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 WDR5BQ86VZ2 330 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 RDH5Q92781 318 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 PLK3Q9H4B4 646 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 FANCMQ8IYD8 2048 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 EPOPA6NHQ4 379 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 TNFSF11O14788 317 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 MDKP21741 143 aaPredicted RBP11.04□□□□□ -0.64
LIG1-221ENST00000613670 RUNX1Q01196 453 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 ZNF385AQ96PM9 386 aaKnown RBP11.04□□□□□ -0.64
LIG1-221ENST00000613670 POMT1Q9Y6A1 747 aa11.04□□□□□ -0.64
LIG1-221ENST00000613670 C2CD4DB7Z1M9 353 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 C9JQL5 133 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 FTCDNL1E5RQL4 147 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 HS3ST1O14792 307 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 ADAM20O43506 726 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 NPIPB7O75200 414 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 IAPPP10997 89 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 SUPT4H1P63272 117 aaKnown RBP11.03□□□□□ -0.64
LIG1-221ENST00000613670 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.03□□□□□ -0.64
LIG1-221ENST00000613670 MKXQ8IYA7 352 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 COMMD1Q8N668 190 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 ZNF610Q8N9Z0 462 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 OR10S1Q8NGN2 331 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 OR6X1Q8NH79 312 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 OIT3Q8WWZ8 545 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 RBMXL1Q96E39 390 aaKnown RBP11.03□□□□□ -0.64
LIG1-221ENST00000613670 SPACA9Q96E40 222 aaPredicted RBP11.03□□□□□ -0.64
LIG1-221ENST00000613670 SMIM8Q96KF7 97 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 CRLF2Q9HC73 371 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 A0A0U1RQK1 487 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 NKX2-6A6NCS4 301 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 RBFOX3A6NFN3 312 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 FAM157CP0CG43 387 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 SURF2Q15527 256 aaPredicted RBP11.03□□□□□ -0.64
LIG1-221ENST00000613670 AADACL3Q5VUY0 350 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 OR52M1Q8NGK5 317 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 P4HTMQ9NXG6 502 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 COA4Q9NYJ1 87 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 KIF26AQ9ULI4 1882 aaPredicted RBP11.03□□□□□ -0.64
LIG1-221ENST00000613670 IGKV1D-8A0A087WSZ0 117 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms