RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 DOPEY1Q5JWR5 2465 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 TRAPPC2LH3BP13 241 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 SULT1C2O00338 296 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 PTTG1O95997 202 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 GRPP07492 148 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 CD3EP07766 207 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 GABRR1P24046 479 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 BLVRBP30043 206 aaPredicted RBP12.09□□□□□ -0.47
USP39-220ENST00000613444 CD200P41217 278 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 MPPED2Q15777 294 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 SPRNQ5BIV9 151 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 ST8SIA4Q92187 359 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 TMEM204Q9BSN7 226 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 SCPEP1Q9HB40 452 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 NKIRAS2Q9NYR9 191 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 IL36RNQ9UBH0 155 aa12.09□□□□□ -0.47
USP39-220ENST00000613444 SSX5O60225 188 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 CYB5AP00167 134 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 LPLP06858 475 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 ACAA1P09110 424 aaPredicted RBP12.08□□□□□ -0.48
USP39-220ENST00000613444 GSTP1P09211 210 aaKnown RBP12.08□□□□□ -0.48
USP39-220ENST00000613444 PGA5P0DJD9 388 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 SPNP16150 400 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 SELENOVP59797 346 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 PRAMEF6Q5VXH4 476 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 ZNF57Q68EA5 555 aaPredicted RBP12.08□□□□□ -0.48
USP39-220ENST00000613444 Q6ZNX1 250 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 POM121Q96HA1 1249 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 NRIP2Q9BQI9 281 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 PECRQ9BY49 303 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 PLK3Q9H4B4 646 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 POU2F3Q9UKI9 436 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 LRBAP50851 2863 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 UBR5O95071 2799 aaPredicted RBP12.08□□□□□ -0.48
USP39-220ENST00000613444 PLSCR5A0PG75 271 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 C19orf84I3L1E1 186 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 NOS1APO75052 506 aaPredicted RBP12.08□□□□□ -0.48
USP39-220ENST00000613444 IGFBP2P18065 325 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 ZNF826PQ6ZT77 177 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 NRARPQ7Z6K4 114 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 TOMM5Q8N4H5 51 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 ELMOD3Q96FG2 381 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 POLDIP2Q9Y2S7 368 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 RNF115Q9Y4L5 304 aa12.08□□□□□ -0.48
USP39-220ENST00000613444 COL12A1Q99715 3063 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 ANKRD20A5PA0PJZ0 165 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 MEIS3P1A6NDR6 274 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 LYRM1O43325 122 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 IGHV1-46P01743 117 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 CHATP28329 748 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 ZNF81P51508 661 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 WDR82Q6UXN9 313 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 C6orf201Q7Z4U5 140 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 NUDCD2Q8WVJ2 157 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 RHOFQ9HBH0 211 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 HSF4Q9ULV5 492 aa12.07□□□□□ -0.48
USP39-220ENST00000613444 FAM90A10PA6NDY2 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A18PA6NE21 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A16PA6NEW6 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A20PA6NIJ5 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A8PA6NJQ4 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A7PA6NKC0 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A22PA8MWA6 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A12PA8MX19 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A5PA8MXJ8 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A23PA8MXZ1 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 SPRY3O43610 288 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 RBBP9O75884 186 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A15PP0C7V4 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A13PP0C7W8 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A14PP0C7W9 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM90A24PP0C7X0 464 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 BTCP35070 178 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 SERPINF1P36955 418 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 INPP1P49441 399 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 SSBP1Q04837 148 aaKnown RBP12.06□□□□□ -0.48
USP39-220ENST00000613444 PDCD1Q15116 288 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 NKPD1Q17RQ9 610 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 PNLIPRP3Q17RR3 467 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 MST1LQ2TV78 715 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 TRIM16LQ309B1 348 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM58AQ8N1B3 248 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 CELF2-AS1Q8N7Q2 184 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 MINDY2Q8NBR6 621 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 MEGF10Q96KG7 1140 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 NEDD4LQ96PU5 975 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 HES4Q9HCC6 221 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 DYSFO75923 2080 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 ADH4P08319 380 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 RNF224P0DH78 156 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 RBMXP38159 391 aaKnown RBP12.06□□□□□ -0.48
USP39-220ENST00000613444 HOXA4Q00056 320 aaPredicted RBP12.06□□□□□ -0.48
USP39-220ENST00000613444 MZT1Q08AG7 82 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 DYRK1AQ13627 763 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 POC1AQ8NBT0 407 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 OR2V2Q96R30 315 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 UFSP2Q9NUQ7 469 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 CACNG2Q9Y698 323 aa12.06□□□□□ -0.48
USP39-220ENST00000613444 FAM208BQ5VWN6 2430 aa12.05□□□□□ -0.48
USP39-220ENST00000613444 SERPINE3A8MV23 424 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms