RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 HTR2CP28335 458 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 ZNF93P35789 620 aaPredicted RBP9.67□□□□□ -0.86
LINC00539-204ENST00000608957 SEC61A1P61619 476 aaKnown RBP9.67□□□□□ -0.86
LINC00539-204ENST00000608957 ZNF45Q02386 682 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 P2RY14Q15391 338 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 UBE2NLQ5JXB2 153 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 C1orf100Q5SVJ3 147 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 CNIH2Q6PI25 160 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 LRRC28Q86X40 367 aaPredicted RBP9.67□□□□□ -0.86
LINC00539-204ENST00000608957 SPATA3Q8NHX4 192 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 NPRL2Q8WTW4 380 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 RAB39BQ96DA2 213 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 CPNE2Q96FN4 548 aaPredicted RBP9.67□□□□□ -0.86
LINC00539-204ENST00000608957 TIMD4Q96H15 378 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 NKX3-1Q99801 234 aaPredicted RBP9.67□□□□□ -0.86
LINC00539-204ENST00000608957 GAL3ST1Q99999 423 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 GCM1Q9NP62 436 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 OR5V1Q9UGF6 321 aa9.67□□□□□ -0.86
LINC00539-204ENST00000608957 F5H0A9 414 aaPredicted RBP9.66□□□□□ -0.86
LINC00539-204ENST00000608957 TMEM178BH3BS89 294 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 ZNF205O95201 554 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 CST4P01036 141 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 APOA1P02647 267 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 EIF4EP06730 217 aaKnown RBP9.66□□□□□ -0.86
LINC00539-204ENST00000608957 ELK1P19419 428 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 PRKACBP22694 351 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 TNFSF4P23510 183 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 SRP14P37108 136 aaKnown RBP9.66□□□□□ -0.86
LINC00539-204ENST00000608957 RANBP1P43487 201 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 POU3F4P49335 361 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 CAPZA1P52907 286 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 HOXA4Q00056 320 aaPredicted RBP9.66□□□□□ -0.86
LINC00539-204ENST00000608957 ZMYND11Q15326 602 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 FAM201AQ5SY85 155 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 PLCXD3Q63HM9 321 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 MOB3CQ70IA8 216 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 KRT74Q7RTS7 529 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 ZDHHC23Q8IYP9 409 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 PNLDC1Q8NA58 520 aaKnown RBP9.66□□□□□ -0.86
LINC00539-204ENST00000608957 OR4D6Q8NGJ1 314 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 OR13G1Q8NGZ3 307 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 PIGCQ92535 297 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 BORCS5Q969J3 196 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 SLC25A28Q96A46 364 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 FAM3DQ96BQ1 224 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 DIRAS2Q96HU8 199 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 CMTM3Q96MX0 182 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 SPACA5Q96QH8 159 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 PAPOLGQ9BWT3 736 aaKnown RBP9.66□□□□□ -0.86
LINC00539-204ENST00000608957 CNTD2Q9H8S5 307 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 EXTL2Q9UBQ6 330 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 SLC7A11Q9UPY5 501 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 PPP1R3CQ9UQK1 317 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 V9GYH0 126 aa9.66□□□□□ -0.86
LINC00539-204ENST00000608957 LOC105371242A0A075B767 164 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 ANKRD30BLA7E2S9 258 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 ZNF850A8MQ14 1090 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 J3QRK9 145 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 CYB5R3P00387 301 aaPredicted RBP9.65□□□□□ -0.86
LINC00539-204ENST00000608957 ARSBP15848 533 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 TNFRSF1AP19438 455 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 TALDO1P37837 337 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 BTG1P62324 171 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 LCN2P80188 198 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 PRDX4Q13162 271 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 MAB21L1Q13394 359 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 DCTN2Q13561 401 aaKnown RBP9.65□□□□□ -0.86
LINC00539-204ENST00000608957 KISS1Q15726 138 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 AWAT2Q6E213 333 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 FAHD2BQ6P2I3 314 aaPredicted RBP9.65□□□□□ -0.86
LINC00539-204ENST00000608957 METAP1DQ6UB28 335 aaPredicted RBP9.65□□□□□ -0.86
LINC00539-204ENST00000608957 FAM131AQ6UXB0 335 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 LHFPL2Q6ZUX7 228 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 MOGAT3Q86VF5 341 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 OR51D1Q8NGF3 324 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 TMEM158Q8WZ71 300 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 DVL3Q92997 716 aaPredicted RBP9.65□□□□□ -0.86
LINC00539-204ENST00000608957 SLC25A38Q96DW6 304 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 BORCS8Q96FH0 119 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 FAHD2AQ96GK7 314 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 GPER1Q99527 375 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 KCNK15Q9H427 330 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 PATZ1Q9HBE1 687 aaKnown RBP9.65□□□□□ -0.86
LINC00539-204ENST00000608957 TMEM100Q9NV29 134 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 OPN4Q9UHM6 478 aa9.65□□□□□ -0.86
LINC00539-204ENST00000608957 MRPS28Q9Y2Q9 187 aaKnown RBP9.65□□□□□ -0.86
LINC00539-204ENST00000608957 TMEM272A0A1B0GTI8 110 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 FABP12A6NFH5 140 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 TRAPPC2LH3BP13 241 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 BPNT1O95861 308 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 CD40LGP29965 261 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 OR3A4PP47883 348 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 RBP2P50120 134 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 FUT6P51993 359 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 PPP5CP53041 499 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 C2orf76Q3KRA6 126 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 TMEM155Q4W5P6 130 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 DMRTC1Q5HYR2 192 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 PRAMEF6Q5VXH4 476 aa9.64□□□□□ -0.87
LINC00539-204ENST00000608957 CRIP3Q6Q6R5 217 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms