RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ZFAND2BQ8WV99 257 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 TSEN15Q8WW01 171 aaKnown RBP13.35□□□□□ -0.27
LSM4-206ENST00000600289 WDFY2Q96P53 400 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 FAM234AQ9H0X4 552 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 CNTD2Q9H8S5 307 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 RHOFQ9HBH0 211 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 SIRT4Q9Y6E7 314 aaPredicted RBP13.35□□□□□ -0.27
LSM4-206ENST00000600289 PRKDCP78527 4128 aaKnown RBP13.35□□□□□ -0.27
LSM4-206ENST00000600289 TRBV23-1A0A0A0MS06 115 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 RFPL4AA6NLU0 287 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 RFPL4AL1F8VTS6 287 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 CD1AP06126 327 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 CDK1P06493 297 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 CD2P06729 351 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 IGHV4-38-2P0DP08 117 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 PRDX2P32119 198 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 WNT4P56705 351 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 PDCD1Q15116 288 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 CRIP3Q6Q6R5 217 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 SAXO1Q8IYX7 474 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 GATAD2BQ8WXI9 593 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 JMJD8Q96S16 334 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 TBX15Q96SF7 602 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 SLC6A7Q99884 636 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 OCEL1Q9H607 264 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 ZNF69Q9UC07 566 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 ZNF281Q9Y2X9 895 aa13.34□□□□□ -0.27
LSM4-206ENST00000600289 TRAV40A0A0B4J280 105 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 MYL12BO14950 172 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 TOX4O94842 621 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 ATP6V1G2O95670 118 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 CYB5AP00167 134 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 TFF1P04155 84 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 C21orf33P30042 268 aaPredicted RBP13.33□□□□□ -0.28
LSM4-206ENST00000600289 BDH1Q02338 343 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 ACSM1Q08AH1 577 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 PDZK1IP1Q13113 114 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 YIF1BQ5BJH7 314 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 ASPHD2Q6ICH7 369 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 METAP1DQ6UB28 335 aaPredicted RBP13.33□□□□□ -0.28
LSM4-206ENST00000600289 IZUMO2Q6UXV1 221 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 C1orf122Q6ZSJ8 110 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 NANOGP1Q8N7R0 232 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 ZNRF1Q8ND25 227 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 SLAMF9Q96A28 289 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 CPNE2Q96FN4 548 aaPredicted RBP13.33□□□□□ -0.28
LSM4-206ENST00000600289 PGLYRP3Q96LB9 341 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 CDCA4Q9BXL8 241 aa13.33□□□□□ -0.28
LSM4-206ENST00000600289 TRBV5-5A0A0J9YX44 114 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 F8VVB4 439 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 F8VWA3 439 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 KDM4BO94953 1096 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 VENTXO95231 258 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 OCM2P0CE71 109 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 OCMP0CE72 109 aaPredicted RBP13.32□□□□□ -0.28
LSM4-206ENST00000600289 SLC35A2P78381 396 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 ZNF146Q15072 292 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 SPIN3Q5JUX0 258 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 GPR157Q5UAW9 335 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 FIP1L1Q6UN15 594 aaKnown RBP13.32□□□□□ -0.28
LSM4-206ENST00000600289 CMTM4Q8IZR5 234 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 ZSCAN4Q8NAM6 433 aaPredicted RBP13.32□□□□□ -0.28
LSM4-206ENST00000600289 TMEM185AQ8NFB2 350 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 MYDGFQ969H8 173 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 PCGF1Q9BSM1 259 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 UNKLQ9H9P5 680 aaKnown RBP13.32□□□□□ -0.28
LSM4-206ENST00000600289 SCN3BQ9NY72 215 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 ERGIC3Q9Y282 383 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 PCDHGB5Q9Y5G0 923 aa13.32□□□□□ -0.28
LSM4-206ENST00000600289 A0A0G2JK05 382 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 K7N7A8 449 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 M0R1W7 72 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 ZNF737O75373 536 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 GPX5O75715 221 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 TK1P04183 234 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 ALDOBP05062 364 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 SFTPBP07988 381 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 CHRM2P08172 466 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 NDUFB7P17568 137 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 RAB3AP20336 220 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 POU3F4P49335 361 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 ZP1P60852 638 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 RPS11P62280 158 aaKnown RBP eCLIP13.31□□□□□ -0.28
LSM4-206ENST00000600289 ARF6P62330 175 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 KISS1Q15726 138 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 H1FXQ92522 213 aaKnown RBP13.31□□□□□ -0.28
LSM4-206ENST00000600289 GHSRQ92847 366 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 EMG1Q92979 244 aaKnown RBP13.31□□□□□ -0.28
LSM4-206ENST00000600289 TMEM106AQ96A25 262 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 MND1Q9BWT6 205 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 MS4A7Q9GZW8 240 aaPredicted RBP13.31□□□□□ -0.28
LSM4-206ENST00000600289 PRDM13Q9H4Q3 707 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 DUSP21Q9H596 190 aa13.31□□□□□ -0.28
LSM4-206ENST00000600289 PAK1IP1Q9NWT1 392 aaPredicted RBP13.31□□□□□ -0.28
LSM4-206ENST00000600289 IGKV1-12A0A0C4DH73 117 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 CENPVL3A0A0U1RRI6 287 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 IGKV1D-12P01611 117 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 HCKP08631 526 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 BCL3P20749 454 aa13.3□□□□□ -0.28
LSM4-206ENST00000600289 NPBWR2P48146 333 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms