RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 DTX3Q8N9I9 347 aa12.86□□□□□ -0.35
VRK3-221ENST00000600284 MYCBPQ99417 103 aaPredicted RBP12.86□□□□□ -0.35
VRK3-221ENST00000600284 TCF7L1Q9HCS4 588 aa12.86□□□□□ -0.35
VRK3-221ENST00000600284 RAB18Q9NP72 206 aa12.86□□□□□ -0.35
VRK3-221ENST00000600284 DAPL1A0PJW8 107 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 ENTPD6O75354 484 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 CCL3L1P16619 93 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 PRKACBP22694 351 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 KIR3DL2P43630 455 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 RBP2P50120 134 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 ALDH3A2P51648 485 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 CCR9P51686 369 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 ZNF273Q14593 569 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 SLC35E4Q6ICL7 350 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 LIAT1Q6ZQX7 453 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 SLC25A26Q70HW3 274 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 UTS2BQ765I0 119 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 BATF2Q8N1L9 274 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 ASCC1Q8N9N2 400 aaKnown RBP12.85□□□□□ -0.35
VRK3-221ENST00000600284 OR2G2Q8NGZ5 317 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 C17orf50Q8WW18 174 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 UBE2FQ969M7 185 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 RNF166Q96A37 237 aaPredicted RBP12.85□□□□□ -0.35
VRK3-221ENST00000600284 SNX22Q96L94 193 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 PPA2Q9H2U2 334 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 MMP27Q9H306 513 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 MEGF8Q7Z7M0 2845 aa12.85□□□□□ -0.35
VRK3-221ENST00000600284 CMYA5Q8N3K9 4069 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 FAM90A8PA6NJQ4 464 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 F8VVB4 439 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 F8VWA3 439 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 H3BNX3 289 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 H3BSH0 61 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 EI24O14681 340 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 SLC16A6O15403 523 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 CYB5AP00167 134 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 ZNF728P0DKX0 622 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 DLX6P56179 175 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 MEF2CQ06413 473 aaPredicted RBP12.84□□□□□ -0.35
VRK3-221ENST00000600284 C11orf88Q6PI97 169 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 GDPD3Q7L5L3 318 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 RDH10Q8IZV5 341 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 OR8H2Q8N162 312 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 OR13D1Q8NGV5 346 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 SLAMF9Q96A28 289 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 RNFT2Q96EX2 444 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 MRPL48Q96GC5 212 aaKnown RBP12.84□□□□□ -0.35
VRK3-221ENST00000600284 FRRS1LQ9P0K9 344 aa12.84□□□□□ -0.35
VRK3-221ENST00000600284 EXOGQ9Y2C4 368 aaKnown RBP12.84□□□□□ -0.35
VRK3-221ENST00000600284 VGLL3A8MV65 326 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 RPSAP08865 295 aaKnown RBP12.83□□□□□ -0.36
VRK3-221ENST00000600284 HTR1AP08908 422 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 ATF1P18846 271 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 GABRA5P31644 462 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 KIR2DS4P43632 304 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 EDDM3BP56851 147 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 ACTA2P62736 377 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 ACTG2P63267 376 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 KPNB1Q14974 876 aaKnown RBP12.83□□□□□ -0.36
VRK3-221ENST00000600284 CRIP3Q6Q6R5 217 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 LHFPL2Q6ZUX7 228 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 ACBD7Q8N6N7 88 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 SPSB1Q96BD6 273 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 ADAT3Q96EY9 351 aaPredicted RBP12.83□□□□□ -0.36
VRK3-221ENST00000600284 MBOAT4Q96T53 435 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 CDCA4Q9BXL8 241 aa12.83□□□□□ -0.36
VRK3-221ENST00000600284 RANBP3Q9H6Z4 567 aaPredicted RBP12.83□□□□□ -0.36
VRK3-221ENST00000600284 TBL2Q9Y4P3 447 aaKnown RBP12.83□□□□□ -0.36
VRK3-221ENST00000600284 IGKV1-9A0A0C4DH69 117 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 TRBV2A0A0J9YWF9 115 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 hADV38S2A0JD32 116 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 KCNAB3O43448 404 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 MPZL2O60487 215 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 HAND1O96004 215 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 MT-ND2P03891 347 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 PIPP12273 146 aaPredicted RBP12.82□□□□□ -0.36
VRK3-221ENST00000600284 ZNF20P17024 532 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 COX7A1P24310 79 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 PEX2P28328 305 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 BMXP51813 675 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 MTCP1P56278 107 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 OR12D2P58182 307 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 ZNF146Q15072 292 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 ZIK1Q3SY52 487 aaPredicted RBP12.82□□□□□ -0.36
VRK3-221ENST00000600284 SPIN3Q5JUX0 258 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 CCDC121Q6ZUS5 278 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 FAM58AQ8N1B3 248 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 OR11H6Q8NGC7 330 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 EMG1Q92979 244 aaKnown RBP12.82□□□□□ -0.36
VRK3-221ENST00000600284 FGGYQ96C11 551 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 MALSU1Q96EH3 234 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 GLS2Q9UI32 602 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 HHLA2Q9UM44 414 aa12.82□□□□□ -0.36
VRK3-221ENST00000600284 TMEM82A0PJX8 343 aa12.81□□□□□ -0.36
VRK3-221ENST00000600284 ODF3BA8MYP8 253 aa12.81□□□□□ -0.36
VRK3-221ENST00000600284 IGHV1-8P0DP01 117 aa12.81□□□□□ -0.36
VRK3-221ENST00000600284 AZGP1P25311 298 aaKnown RBP12.81□□□□□ -0.36
VRK3-221ENST00000600284 ERP29P30040 261 aaKnown RBP12.81□□□□□ -0.36
VRK3-221ENST00000600284 NANOS3P60323 173 aaKnown RBP12.81□□□□□ -0.36
VRK3-221ENST00000600284 ZNF91Q05481 1191 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms