RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 SLAMF9Q96A28 289 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 PGLYRP3Q96LB9 341 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 C1orf147Q96MC9 270 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-213ENST00000598355 JMJD8Q96S16 334 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 PCGF1Q9BSM1 259 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 FAM234AQ9H0X4 552 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 DHDHQ9UQ10 334 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 ANK2Q01484 3957 aa13.28□□□□□ -0.28
TRIM28-213ENST00000598355 IGKV1-12A0A0C4DH73 117 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 CENPVL3A0A0U1RRI6 287 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 M0R1W7 72 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 ZNF737O75373 536 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 IGKV1D-12P01611 117 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 MTCP1P56278 107 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 ZP1P60852 638 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 ARF6P62330 175 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 PDZK1IP1Q13113 114 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 GPR157Q5UAW9 335 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 RNLSQ5VYX0 342 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 C1orf122Q6ZSJ8 110 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 AHSA2Q719I0 299 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 RNF144BQ7Z419 303 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 MKXQ8IYA7 352 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 SAXO1Q8IYX7 474 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 TMEM185AQ8NFB2 350 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 OR5D14Q8NGL3 314 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 GPR148Q8TDV2 347 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 ANKRD60Q9BZ19 345 aa13.27□□□□□ -0.29
TRIM28-213ENST00000598355 ELL3Q9HB65 397 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-213ENST00000598355 IGHV3OR16-10A0A075B7F0 116 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 TRBV5-5A0A0J9YX44 114 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 K7N7A8 449 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 SLC1A7O00341 560 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 RGS9O75916 674 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-213ENST00000598355 KDM4BO94953 1096 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 MYF6P23409 242 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 C21orf33P30042 268 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-213ENST00000598355 NPBWR2P48146 333 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 POU3F4P49335 361 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 RPS11P62280 158 aaKnown RBP eCLIP13.26□□□□□ -0.29
TRIM28-213ENST00000598355 RIPK1Q13546 671 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 ZNF146Q15072 292 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 C6orf141Q5SZD1 244 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 BATF2Q8N1L9 274 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 SIGLECL1Q8N7X8 197 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 FAM216AQ8WUB2 273 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 TSEN15Q8WW01 171 aaKnown RBP13.26□□□□□ -0.29
TRIM28-213ENST00000598355 H1FXQ92522 213 aaKnown RBP13.26□□□□□ -0.29
TRIM28-213ENST00000598355 TNFRSF14Q92956 283 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 MS4A7Q9GZW8 240 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-213ENST00000598355 RHOFQ9HBH0 211 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 RBFOX1Q9NWB1 397 aaKnown RBP13.26□□□□□ -0.29
TRIM28-213ENST00000598355 IL36RNQ9UBH0 155 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 ZNF281Q9Y2X9 895 aa13.26□□□□□ -0.29
TRIM28-213ENST00000598355 CLDN34H7C241 214 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 TK1P04183 234 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 CD1AP06126 327 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 NDUFB7P17568 137 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 BCL3P20749 454 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 WNT4P56705 351 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 TAS2R43P59537 309 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 UBA52P62987 128 aaKnown RBP13.25□□□□□ -0.29
TRIM28-213ENST00000598355 SPIN3Q5JUX0 258 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 BRD3OSQ6XYD6 125 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 VMO1Q7Z5L0 202 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 CMTM4Q8IZR5 234 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-213ENST00000598355 ZSCAN4Q8NAM6 433 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-213ENST00000598355 BPIFB6Q8NFQ5 453 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 OR51A2Q8NGJ7 313 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 GATAD2BQ8WXI9 593 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 EMG1Q92979 244 aaKnown RBP13.25□□□□□ -0.29
TRIM28-213ENST00000598355 TMEM106AQ96A25 262 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 SPACA5Q96QH8 159 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 VCX3BQ9H321 246 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 ZMAT3Q9HA38 289 aaKnown RBP13.25□□□□□ -0.29
TRIM28-213ENST00000598355 NEK6Q9HC98 313 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 C19orf12Q9NSK7 152 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 PAK1IP1Q9NWT1 392 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-213ENST00000598355 CHCHD3Q9NX63 227 aaKnown RBP13.25□□□□□ -0.29
TRIM28-213ENST00000598355 ONECUT1Q9UBC0 465 aa13.25□□□□□ -0.29
TRIM28-213ENST00000598355 SOX21Q9Y651 276 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-213ENST00000598355 IGHV1-69DA0A0B4J2H0 117 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 DNAJC9-AS1A6NH13 148 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 TRIM77I1YAP6 450 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 SPRY1O43609 319 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-213ENST00000598355 IGHV1-69P01742 117 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 CDK1P06493 297 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 CD2P06729 351 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 CHRM2P08172 466 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 SLC35A2P78381 396 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 BDH1Q02338 343 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 COL10A1Q03692 680 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 ACSM1Q08AH1 577 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 KISS1Q15726 138 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 RUSC1-AS1Q66K80 236 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 FAM58AQ8N1B3 248 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 STX19Q8N4C7 294 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 NANOGP1Q8N7R0 232 aa13.24□□□□□ -0.29
TRIM28-213ENST00000598355 GHSRQ92847 366 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms