RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 NUBP2Q9Y5Y2 271 aa8.96□□□□□ -0.98
SS18-217ENST00000580958 CACNA1DQ01668 2161 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.95□□□□□ -0.98
SS18-217ENST00000580958 LRP5LA4QPB2 252 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 DPRXA6NFQ7 191 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 TMEM210A6NLX4 147 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 M0QYG6 137 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 ZNF250P15622 560 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 MPZP25189 248 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 HLA-DMAP28067 261 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 CHATP28329 748 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 CHRNB4P30926 498 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 RAB25P57735 213 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 FGF12P61328 243 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 RPS23P62266 143 aaKnown RBP8.95□□□□□ -0.98
SS18-217ENST00000580958 BTG1P62324 171 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 IL24Q13007 206 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 PDCD1Q15116 288 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 AGAP6Q5VW22 663 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 ELP2Q6IA86 826 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 ZNF782Q6ZMW2 699 aaPredicted RBP8.95□□□□□ -0.98
SS18-217ENST00000580958 SCCPDHQ8NBX0 429 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 OR4S1Q8NGB4 309 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 DEDD2Q8WXF8 326 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 GTF3AQ92664 365 aaKnown RBP8.95□□□□□ -0.98
SS18-217ENST00000580958 WFIKKN1Q96NZ8 548 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 TINAGL1Q9GZM7 467 aaPredicted RBP8.95□□□□□ -0.98
SS18-217ENST00000580958 CXXC4Q9H2H0 198 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 MSL2Q9HCI7 577 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 NUDT15Q9NV35 164 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 PLEKHJ1Q9NW61 149 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 NKIRAS2Q9NYR9 191 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 COPZ2Q9P299 210 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 IL36RNQ9UBH0 155 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 ZNF107Q9UII5 783 aaPredicted RBP8.95□□□□□ -0.98
SS18-217ENST00000580958 DUSP13Q9UII6 198 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 POU2F3Q9UKI9 436 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 ANAPC10Q9UM13 185 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 ALG5Q9Y673 324 aa8.95□□□□□ -0.98
SS18-217ENST00000580958 IGHV3-64DA0A0J9YX35 117 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 NKX2-6A6NCS4 301 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 ZNF736B4DX44 427 aaPredicted RBP8.94□□□□□ -0.98
SS18-217ENST00000580958 F5H5P2 479 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 PDCD6O75340 191 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 CA11O75493 328 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 RHBDL1O75783 438 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 RAB3DO95716 219 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 IGHV3-13P01766 116 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 CD74P04233 296 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 GRPP07492 148 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 H2AFB2P0C5Z0 115 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 PPP3CBP16298 524 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 PRKACAP17612 351 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 NAT1P18440 290 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 PTAFRP25105 342 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 CBX5P45973 191 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 ARL6IP1Q15041 203 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 FAM76BQ5HYJ3 339 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 OR52W1Q6IF63 320 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 TMEM108Q6UXF1 575 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 SSX8Q7RTT4 187 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 OR13G1Q8NGZ3 307 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 OR56B4Q8NH76 319 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 TMEM171Q8WVE6 324 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 DYRK2Q92630 601 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 EMG1Q92979 244 aaKnown RBP8.94□□□□□ -0.98
SS18-217ENST00000580958 RNASE6Q93091 150 aaKnown RBP8.94□□□□□ -0.98
SS18-217ENST00000580958 SYT3Q9BQG1 590 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 SULT4A1Q9BR01 284 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 FAAP24Q9BTP7 215 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 C20orf85Q9H1P6 137 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 COQ3Q9NZJ6 369 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 AK3Q9UIJ7 227 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 HSF4Q9ULV5 492 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 ROS1P08922 2347 aa8.94□□□□□ -0.98
SS18-217ENST00000580958 DYSFO75923 2080 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 NBEAQ8NFP9 2946 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A10PA6NDY2 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A18PA6NE21 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A16PA6NEW6 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A20PA6NIJ5 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A8PA6NJQ4 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A7PA6NKC0 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 SERPINE3A8MV23 424 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A22PA8MWA6 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A12PA8MX19 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A5PA8MXJ8 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A23PA8MXZ1 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 ABCD4O14678 606 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 ARPC1BO15143 372 aaKnown RBP8.93□□□□□ -0.98
SS18-217ENST00000580958 OR7C1O76099 320 aaPredicted RBP8.93□□□□□ -0.98
SS18-217ENST00000580958 DHFRP00374 187 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 AMY2AP04746 511 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 CSN2P05814 226 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A15PP0C7V4 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A13PP0C7W8 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A14PP0C7W9 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 FAM90A24PP0C7X0 464 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 ZNF735P0CB33 412 aa8.93□□□□□ -0.98
SS18-217ENST00000580958 KLF3P57682 345 aaPredicted RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms