RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 OR10R2Q8NGX6 335 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 SLAMF9Q96A28 289 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 NKX3-1Q99801 234 aaPredicted RBP12.92□□□□□ -0.34
SS18-215ENST00000580642 SRRQ9GZT4 340 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 SCPEP1Q9HB40 452 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 DECR2Q9NUI1 292 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 GLS2Q9UI32 602 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 ST3GAL6Q9Y274 331 aa12.92□□□□□ -0.34
SS18-215ENST00000580642 USP9XQ93008 2570 aaPredicted RBP12.92□□□□□ -0.34
SS18-215ENST00000580642 FOXI3A8MTJ6 420 aaPredicted RBP12.91□□□□□ -0.34
SS18-215ENST00000580642 SRRM5B3KS81 715 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 GSTZ1O43708 216 aaPredicted RBP12.91□□□□□ -0.34
SS18-215ENST00000580642 FSTL3O95633 263 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 HLA-DQB1P01920 261 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 IRF2P14316 349 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 BCL3P20749 454 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 NPBWR2P48146 333 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 PTH2RP49190 550 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 TAS2R20P59543 309 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 ZNF146Q15072 292 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 ZNF79Q15937 498 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 PNLIPRP3Q17RR3 467 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 SMIM21Q3B7S5 101 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 SP5Q6BEB4 398 aaPredicted RBP12.91□□□□□ -0.34
SS18-215ENST00000580642 DNM1P46Q6ZS02 220 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 C1orf87Q8N0U7 546 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 ITLN1Q8WWA0 313 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 NEU4Q8WWR8 484 aaPredicted RBP12.91□□□□□ -0.34
SS18-215ENST00000580642 GTF3AQ92664 365 aaKnown RBP12.91□□□□□ -0.34
SS18-215ENST00000580642 RAB3CQ96E17 227 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 TRAF4Q9BUZ4 470 aaPredicted RBP12.91□□□□□ -0.34
SS18-215ENST00000580642 RAB1BQ9H0U4 201 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 BANF2Q9H503 90 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 SAP30LQ9HAJ7 183 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 GCM1Q9NP62 436 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 C1orf123Q9NWV4 160 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 RNF7Q9UBF6 113 aa12.91□□□□□ -0.34
SS18-215ENST00000580642 RALYQ9UKM9 306 aaKnown RBP12.91□□□□□ -0.34
SS18-215ENST00000580642 A0A1W2PP11 408 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 POM121CA8CG34 1229 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 SERPINE3A8MV23 424 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 H7C417 338 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 RHBDL1O75783 438 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 NXPH2O95156 264 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 CLDN1O95832 211 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 KNG1P01042 644 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 LHBP01229 141 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 VEGFCP49767 419 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 SSBP1Q04837 148 aaKnown RBP12.9□□□□□ -0.34
SS18-215ENST00000580642 PLA2G7Q13093 441 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 DCTN2Q13561 401 aaKnown RBP12.9□□□□□ -0.34
SS18-215ENST00000580642 MPPED2Q15777 294 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 PRAMEF6Q5VXH4 476 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 OR10K1Q8NGX5 313 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 DEDD2Q8WXF8 326 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 EMG1Q92979 244 aaKnown RBP12.9□□□□□ -0.34
SS18-215ENST00000580642 C14orf79Q96F83 325 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 KCNK15Q9H427 330 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 AUNIPQ9H7T9 357 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 PPP1R3CQ9UQK1 317 aa12.9□□□□□ -0.34
SS18-215ENST00000580642 FLNCQ14315 2725 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 TRAV18A0A075B6X5 111 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 A0A0G2JMP0 313 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 A0A0X1KG70 313 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 GABARAPH6UMI1 98 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 PYCARD-AS1I3L0S3 204 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 CD8AP01732 235 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 HIST1H1DP16402 221 aaKnown RBP12.89□□□□□ -0.35
SS18-215ENST00000580642 FUT3P21217 361 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 ZNF260Q3ZCT1 412 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 PYDC2Q56P42 97 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 Q6ZTK2 550 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 BIVMQ86UB2 503 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 MOGAT3Q86VF5 341 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 Q8N402 240 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 CHST4Q8NCG5 386 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 OR4M2Q8NGB6 313 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 LRRC29Q8WV35 223 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 NEDD4LQ96PU5 975 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 ABHD1Q96SE0 405 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 CXorf56Q9H5V9 222 aa12.89□□□□□ -0.35
SS18-215ENST00000580642 RBFOX1Q9NWB1 397 aaKnown RBP12.89□□□□□ -0.35
SS18-215ENST00000580642 RCC2Q9P258 522 aaKnown RBP12.89□□□□□ -0.35
SS18-215ENST00000580642 ZNF107Q9UII5 783 aaPredicted RBP12.89□□□□□ -0.35
SS18-215ENST00000580642 MRPS7Q9Y2R9 242 aaKnown RBP12.89□□□□□ -0.35
SS18-215ENST00000580642 hCG_1807616A0A1W2PRN6 198 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 ISPDA4D126 451 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 PDCD6O75340 191 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 UPK1BO75841 260 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 PRKACAP17612 351 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 GLRA1P23415 457 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 BLVRBP30043 206 aaPredicted RBP12.88□□□□□ -0.35
SS18-215ENST00000580642 PRSS3P35030 304 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 TMEM50BP56557 158 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 TAF9Q16594 264 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 SHEQ5VZ18 495 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 ACP7Q6ZNF0 438 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 SMIM4Q8WVI0 70 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 FCAMRQ8WWV6 532 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 CLEC4MQ9H2X3 399 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms