RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 NPBWR2P48146 333 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 IL13RA2Q14627 380 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 SMIM21Q3B7S5 101 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 RAB12Q6IQ22 244 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 LINC00596Q86U02 117 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 LAX1Q8IWV1 398 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 RDH5Q92781 318 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 EMG1Q92979 244 aaKnown RBP9.05□□□□□ -0.96
SS18-213ENST00000579640 PHF21AQ96BD5 680 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 SLC25A38Q96DW6 304 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 NUDT16L1Q9BRJ7 211 aaKnown RBP9.05□□□□□ -0.96
SS18-213ENST00000579640 SELENOIQ9C0D9 397 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 BANF2Q9H503 90 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 HMG20AQ9NP66 347 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 TMEM106BQ9NUM4 274 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 RBFOX1Q9NWB1 397 aaKnown RBP9.05□□□□□ -0.96
SS18-213ENST00000579640 RABL2AQ9UBK7 228 aaPredicted RBP9.05□□□□□ -0.96
SS18-213ENST00000579640 RABL2BQ9UNT1 228 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 COL12A1Q99715 3063 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 CACNA1DQ01668 2161 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 TANC2Q9HCD6 1990 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 A0A1W2PP11 408 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 TPPPO94811 219 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 EIF4EP06730 217 aaKnown RBP9.05□□□□□ -0.96
SS18-213ENST00000579640 PRKACAP17612 351 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 ELK1P19419 428 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 TNFSF8P32971 234 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 CDKN1AP38936 164 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 EFNB2P52799 333 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 RBM11P57052 281 aaKnown RBP9.05□□□□□ -0.96
SS18-213ENST00000579640 HFEQ30201 348 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 SPIN3Q5JUX0 258 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 BAIAP2L2Q6UXY1 529 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 ACP7Q6ZNF0 438 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 CMTM4Q8IZR5 234 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM89BQ8N5H3 189 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 GCSAMQ8N6F7 178 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 OR56B1Q8NGI3 324 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 DIRAS2Q96HU8 199 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 Q96M66 194 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 ZNF488Q96MN9 340 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 LPAR5Q9H1C0 372 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 ATG5Q9H1Y0 275 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 DIABLOQ9NR28 239 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 ST3GAL6Q9Y274 331 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 DYSFO75923 2080 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 F8VVB4 439 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 F8VWA3 439 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 F12P00748 615 aaPredicted RBP9.04□□□□□ -0.96
SS18-213ENST00000579640 ETV6P41212 452 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 EFNA4P52798 201 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 PLA2G7Q13093 441 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 ZNF146Q15072 292 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 MPV17LQ2QL34 196 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 SPANXN2Q5MJ10 180 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 ZNF787Q6DD87 383 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 CNIH2Q6PI25 160 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 METAP1DQ6UB28 335 aaPredicted RBP9.04□□□□□ -0.96
SS18-213ENST00000579640 CCDC190Q86UF4 302 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 S100ZQ8WXG8 99 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 SEBOXQ9HB31 216 aaPredicted RBP9.04□□□□□ -0.96
SS18-213ENST00000579640 EXTL2Q9UBQ6 330 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 GLS2Q9UI32 602 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 PLEKHA6Q9Y2H5 1048 aa9.04□□□□□ -0.96
SS18-213ENST00000579640 HRNRQ86YZ3 2850 aaPredicted RBP9.03□□□□□ -0.96
SS18-213ENST00000579640 TMEM178BH3BS89 294 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 XRCC3O43542 346 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 FSTL3O95633 263 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 KNG1P01042 644 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 PTBP1P26599 531 aaKnown RBP eCLIP9.03□□□□□ -0.963e-9■■■■□ 23.3
SS18-213ENST00000579640 NR4A2P43354 598 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 PITPNBP48739 271 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 LSAMPQ13449 338 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 ARL6IP1Q15041 203 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 C15orf40Q8WUR7 153 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 CCL17Q92583 94 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 TSC22D3Q99576 134 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 GAL3ST1Q99999 423 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 SPACA1Q9HBV2 294 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 MYOZ1Q9NP98 299 aaPredicted RBP9.03□□□□□ -0.96
SS18-213ENST00000579640 DNAJB11Q9UBS4 358 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 RAB27BO00194 218 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 CYB5R3P00387 301 aaPredicted RBP9.03□□□□□ -0.96
SS18-213ENST00000579640 DAOP14920 347 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 PAX1P15863 534 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 MUC1P15941 1255 aaPredicted RBP9.03□□□□□ -0.96
SS18-213ENST00000579640 EGR1P18146 543 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 MNDAP41218 407 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 VEGFCP49767 419 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 ZNF45Q02386 682 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 TAF9Q16594 264 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 PIGYQ3MUY2 71 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 TEX36Q5VZQ5 186 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 BATF2Q8N1L9 274 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 OR4M1Q8NGD0 313 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 OR10R2Q8NGX6 335 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 NICN1Q9BSH3 213 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 WDR13Q9H1Z4 485 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 IFT22Q9H7X7 185 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 BARX1Q9HBU1 254 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms