RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 F8VWA3 439 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 H3BUI4 141 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 SULT1C2O00338 296 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 GEMIN2O14893 280 aaKnown RBP11.58□□□□□ -0.56
CCDC40-209ENST00000573474 MELTFP08582 738 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 GSTP1P09211 210 aaKnown RBP11.58□□□□□ -0.56
CCDC40-209ENST00000573474 RNF224P0DH78 156 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 HIST1H1DP16402 221 aaKnown RBP11.58□□□□□ -0.56
CCDC40-209ENST00000573474 PRKACAP17612 351 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 GABRR1P24046 479 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 CFHR2P36980 270 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 GATA4P43694 442 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 SCN1BQ07699 218 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 SRSF1Q07955 248 aaKnown RBP eCLIP11.58□□□□□ -0.56
CCDC40-209ENST00000573474 MPPED2Q15777 294 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 TAF9Q16594 264 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 SWI5Q1ZZU3 235 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 PIGYQ3MUY2 71 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 FAM209AQ5JX71 171 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 STEAP3Q658P3 488 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 WDR82Q6UXN9 313 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 DNM1P46Q6ZS02 220 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 ZNF826PQ6ZT77 177 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 Q6ZTK2 550 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 LINC00596Q86U02 117 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 LYSMD2Q8IV50 215 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 BATF2Q8N1L9 274 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 MUC15Q8N387 334 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 C19orf18Q8NEA5 215 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 OR10Z1Q8NGY1 313 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 OR52I2Q8NH67 350 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 ITLN1Q8WWA0 313 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 EMG1Q92979 244 aaKnown RBP11.58□□□□□ -0.56
CCDC40-209ENST00000573474 ERGIC1Q969X5 290 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 SPOCK3Q9BQ16 436 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 MS4A5Q9H3V2 200 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 SCPEP1Q9HB40 452 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 DYNLRB1Q9NP97 96 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 SPTBN1Q01082 2364 aaKnown RBP11.58□□□□□ -0.56
CCDC40-209ENST00000573474 PLCE1Q9P212 2302 aa11.58□□□□□ -0.56
CCDC40-209ENST00000573474 A0A1W2PQ09 198 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 A6NNC1 897 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 HS3ST1O14792 307 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 NXPH2O95156 264 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 PTHLHP12272 177 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 GNB3P16520 340 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 INPP1P49441 399 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 SNRPD2P62316 118 aaKnown RBP11.57□□□□□ -0.56
CCDC40-209ENST00000573474 IL13RA2Q14627 380 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 TESK1Q15569 626 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 PNLIPRP3Q17RR3 467 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 PCGF3Q3KNV8 242 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 RNASE12Q5GAN4 147 aaKnown RBP11.57□□□□□ -0.56
CCDC40-209ENST00000573474 PLAC9Q5JTB6 97 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 MOGAT3Q86VF5 341 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 YIPF5Q969M3 257 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 FBXW5Q969U6 566 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 ARHGAP5-AS1Q96IT6 56 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 NEDD4LQ96PU5 975 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 PECRQ9BY49 303 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 EGLN1Q9GZT9 426 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.57□□□□□ -0.56
CCDC40-209ENST00000573474 FAIMQ9NVQ4 179 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 PLEKHJ1Q9NW61 149 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 RASL12Q9NYN1 266 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 FBXO9Q9UK97 447 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-209ENST00000573474 HSF4Q9ULV5 492 aa11.57□□□□□ -0.56
CCDC40-209ENST00000573474 FAM208BQ5VWN6 2430 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 CHD6Q8TD26 2715 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 hCG_1807616A0A1W2PRN6 198 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 MEIOCA2RUB1 952 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 TMEM235A6NFC5 223 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 MFNGO00587 321 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 TPD52L2O43399 206 aaKnown RBP11.56□□□□□ -0.56
CCDC40-209ENST00000573474 LANCL1O43813 399 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 PDCD6O75340 191 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 CD3GP09693 182 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 TNFRSF1AP19438 455 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 FUT3P21217 361 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 DEFA1P59665 94 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 DEFA3P59666 94 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 MPV17LQ2QL34 196 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 SPRNQ5BIV9 151 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 SIGIRRQ6IA17 410 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 FIP1L1Q6UN15 594 aaKnown RBP11.56□□□□□ -0.56
CCDC40-209ENST00000573474 GPX8Q8TED1 209 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 LRRC29Q8WV35 223 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 GCDHQ92947 438 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-209ENST00000573474 TRIM63Q969Q1 353 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 SEH1LQ96EE3 360 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 ZMAT3Q9HA38 289 aaKnown RBP11.56□□□□□ -0.56
CCDC40-209ENST00000573474 HES4Q9HCC6 221 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 DECR2Q9NUI1 292 aa11.56□□□□□ -0.56
CCDC40-209ENST00000573474 RBMX2Q9Y388 322 aaKnown RBP11.56□□□□□ -0.56
CCDC40-209ENST00000573474 DOPEY1Q5JWR5 2465 aa11.55□□□□□ -0.56
CCDC40-209ENST00000573474 MYO18BQ8IUG5 2567 aa11.55□□□□□ -0.56
CCDC40-209ENST00000573474 UBR5O95071 2799 aaPredicted RBP11.55□□□□□ -0.56
CCDC40-209ENST00000573474 SERPINE3A8MV23 424 aa11.55□□□□□ -0.56
CCDC40-209ENST00000573474 H7C417 338 aa11.55□□□□□ -0.56
CCDC40-209ENST00000573474 ORC5O43913 435 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms