RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ZC3HAV1Q7Z2W4 902 aaKnown RBP19.74■□□□□ 0.75
VPS53-211ENST00000571805 FBXL14Q8N1E6 418 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 TOMM40LQ969M1 308 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 PRRX2Q99811 253 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 HRH4Q9H3N8 390 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 RGCCQ9H4X1 137 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 BCO1Q9HAY6 547 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 UQCC1Q9NVA1 299 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 PLA2G2EQ9NZK7 142 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 TCFL5Q9UL49 500 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 AMDHD2Q9Y303 409 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 K7EPK0 472 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 CER1O95813 267 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 CST4P01036 141 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 TMEM187Q14656 261 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 FAM71E2Q8N5Q1 922 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 TREM1Q9NP99 234 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 RYDENQ9NUL5 291 aaKnown RBP19.73■□□□□ 0.75
VPS53-211ENST00000571805 TRAPPC6AO75865 159 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 TSPAN9O75954 239 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 FCGR2CP31995 323 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 LPAR6P43657 344 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 FUT6P51993 359 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 EIF5AL1Q6IS14 154 aaKnown RBP19.73■□□□□ 0.75
VPS53-211ENST00000571805 GALNT14Q96FL9 552 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 NAA60Q9H7X0 242 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 PCSK5Q92824 1860 aa19.73■□□□□ 0.75
VPS53-211ENST00000571805 B4E171 279 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 TSPAN7P41732 249 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 OR8B8Q15620 311 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 SP6Q3SY56 376 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 TRIM61Q5EBN2 209 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 ACER2Q5QJU3 275 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 NAXEQ8NCW5 288 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 SEC11CQ9BY50 192 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 RHOFQ9HBH0 211 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 FBXL17Q9UF56 701 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 ST3GAL6Q9Y274 331 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 KCNIP3Q9Y2W7 256 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 MRPS18CQ9Y3D5 142 aaKnown RBP19.72■□□□□ 0.75
VPS53-211ENST00000571805 FAM221AA4D161 298 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 PINLYPA6NC86 204 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 MMP7P09237 267 aaPredicted RBP19.72■□□□□ 0.75
VPS53-211ENST00000571805 SULT1A2P50226 295 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 CAV2P51636 162 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 PCBD1P61457 104 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 ESX1Q8N693 406 aa19.72■□□□□ 0.75
VPS53-211ENST00000571805 RTN4IP1Q8WWV3 396 aaPredicted RBP19.72■□□□□ 0.75
VPS53-211ENST00000571805 CYTIPO60759 359 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 GAPDHP04406 335 aaKnown RBP19.71■□□□□ 0.75
VPS53-211ENST00000571805 EDN3P14138 238 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 TMEM33P57088 247 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 SMCO1Q147U7 214 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 TMEM88Q6PEY1 159 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 SLC22A25Q6T423 547 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 Q6ZPA2 131 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 ZNF845Q96IR2 970 aaPredicted RBP19.71■□□□□ 0.75
VPS53-211ENST00000571805 FAM96BQ9Y3D0 163 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 LSM5Q9Y4Y9 91 aaKnown RBP19.71■□□□□ 0.75
VPS53-211ENST00000571805 ZNF587BE7ETH6 402 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 OR5AC1P0C628 307 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 GFRA1P56159 465 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 ABHD3Q8WU67 409 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 SLC7A11Q9UPY5 501 aa19.71■□□□□ 0.75
VPS53-211ENST00000571805 COL27A1Q8IZC6 1860 aaPredicted RBP19.71■□□□□ 0.75
VPS53-211ENST00000571805 MED6O75586 246 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 F12P00748 615 aaPredicted RBP19.7■□□□□ 0.74
VPS53-211ENST00000571805 MUC1P15941 1255 aaPredicted RBP19.7■□□□□ 0.74
VPS53-211ENST00000571805 NME2P22392 152 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 DAZAP2Q15038 168 aaPredicted RBP19.7■□□□□ 0.74
VPS53-211ENST00000571805 BTNL8Q6UX41 500 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 LRTM2Q8N967 370 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 PIGCQ92535 297 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 JTBO76095 146 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 MBPP02686 304 aaPredicted RBP19.7■□□□□ 0.74
VPS53-211ENST00000571805 TCN2P20062 427 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 FXYD4P59646 89 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 ABCA11PQ4W5N1 156 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 DCAF12Q5T6F0 453 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 PLCXD3Q63HM9 321 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 TIPARPQ7Z3E1 657 aaKnown RBP19.7■□□□□ 0.74
VPS53-211ENST00000571805 SPSB4Q96A44 273 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 CDX2Q99626 313 aaPredicted RBP19.7■□□□□ 0.74
VPS53-211ENST00000571805 NRIP2Q9BQI9 281 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 PRDM6Q9NQX0 595 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 FREM2Q5SZK8 3169 aa19.7■□□□□ 0.74
VPS53-211ENST00000571805 ZNF816-ZNF321PA0A0X1KG74 233 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 PDCD6O75340 191 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 GDF1P27539 372 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 FOXO1Q12778 655 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 PDCD1Q15116 288 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 TSPO2Q5TGU0 170 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 DHRS7BQ6IAN0 325 aaPredicted RBP19.69■□□□□ 0.74
VPS53-211ENST00000571805 CPEB3Q8NE35 698 aaKnown RBP19.69■□□□□ 0.74
VPS53-211ENST00000571805 C1QTNF5Q9BXJ0 243 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 PLEKHA2Q9HB19 425 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 RCC2Q9P258 522 aaKnown RBP19.69■□□□□ 0.74
VPS53-211ENST00000571805 FBXO24O75426 580 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 LYZL2Q7Z4W2 148 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 CALHM1Q8IU99 346 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms