RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 C9orf16Q9BUW7 83 aa6.37□□□□□ -1.39
CDH3-209ENST00000569080 RBFOX1Q9NWB1 397 aaKnown RBP6.37□□□□□ -1.39
CDH3-209ENST00000569080 MYRFQ9Y2G1 1151 aa6.37□□□□□ -1.39
CDH3-209ENST00000569080 ORC6Q9Y5N6 252 aa6.37□□□□□ -1.39
CDH3-209ENST00000569080 GMPPBQ9Y5P6 360 aa6.37□□□□□ -1.39
CDH3-209ENST00000569080 WNK1Q9H4A3 2382 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 IGKV1-12A0A0C4DH73 117 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 TRBV2A0A0J9YWF9 115 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 A0A1B0GUS0 222 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 DAPL1A0PJW8 107 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 CLPSL1A2RUU4 121 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 C17orf98A8MV24 154 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 ODF3BA8MYP8 253 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 E9PI62 339 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 PSPNO60542 156 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 WBP4O75554 376 aaKnown RBP6.36□□□□□ -1.39
CDH3-209ENST00000569080 IGKV1D-12P01611 117 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 MT-ND2P03891 347 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 EEF1B2P24534 225 aaKnown RBP6.36□□□□□ -1.39
CDH3-209ENST00000569080 AZGP1P25311 298 aaKnown RBP6.36□□□□□ -1.39
CDH3-209ENST00000569080 PAX6P26367 422 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 NPBWR2P48146 333 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 BMXP51813 675 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 CAPZA1P52907 286 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 ACTA2P62736 377 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 ACTG2P63267 376 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 COL10A1Q03692 680 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 GALEQ14376 348 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 CNN3Q15417 329 aaKnown RBP6.36□□□□□ -1.39
CDH3-209ENST00000569080 MIDNQ504T8 468 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 LDLRAD2Q5SZI1 272 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 TMEM244Q5VVB8 128 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 ASPHD2Q6ICH7 369 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 Q6ZSV7 163 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 OR8H2Q8N162 312 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 SYS1Q8N2H4 156 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 OR4M1Q8NGD0 313 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 RPS4Y2Q8TD47 263 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 RGP1Q92546 391 aaPredicted RBP6.36□□□□□ -1.39
CDH3-209ENST00000569080 SPSB1Q96BD6 273 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 BORCS8Q96FH0 119 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 ALG8Q9BVK2 526 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 JAM3Q9BX67 310 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 DPAGT1Q9H3H5 408 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 ISG20L2Q9H9L3 353 aaKnown RBP6.36□□□□□ -1.39
CDH3-209ENST00000569080 SEBOXQ9HB31 216 aaPredicted RBP6.36□□□□□ -1.39
CDH3-209ENST00000569080 BEX1Q9HBH7 125 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 MRPS18AQ9NVS2 196 aaKnown RBP6.36□□□□□ -1.39
CDH3-209ENST00000569080 FAM118AQ9NWS6 357 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 ERVK13-1Q9NX77 482 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 OR14J1Q9UGF5 321 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 SLC7A11Q9UPY5 501 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 CAB39Q9Y376 341 aaPredicted RBP6.36□□□□□ -1.39
CDH3-209ENST00000569080 FAM96BQ9Y3D0 163 aa6.36□□□□□ -1.39
CDH3-209ENST00000569080 NOTCH1P46531 2555 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 LOC100130705A0A1B0GUX0 176 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 FAM90A8PA6NJQ4 464 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 H0YAE9 185 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 J3QLW9 94 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 EBAG9O00559 213 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 ANGPTL7O43827 346 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 TSPAN9O75954 239 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 CLPXO76031 633 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 ZFPL1O95159 310 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 HAND1O96004 215 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 RBP4P02753 201 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 HTR1AP08908 422 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 LIMS3P0CW19 117 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 LIMS4P0CW20 117 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 PIPP12273 146 aaPredicted RBP6.35□□□□□ -1.39
CDH3-209ENST00000569080 ZNF19P17023 458 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 ATF1P18846 271 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 BCL3P20749 454 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 OR3A1P47881 315 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 RBP2P50120 134 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 RAB40BQ12829 278 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 PDZK1IP1Q13113 114 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 ALKBH1Q13686 389 aaKnown RBP6.35□□□□□ -1.39
CDH3-209ENST00000569080 BLMHQ13867 455 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 ZNF146Q15072 292 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 SMN1Q16637 294 aaKnown RBP6.35□□□□□ -1.39
CDH3-209ENST00000569080 ZSCAN26Q16670 478 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 ZNF529Q6P280 563 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 GDPGP1Q6ZNW5 385 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 ZBTB49Q6ZSB9 765 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 LHFPL2Q6ZUX7 228 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 LHFPL3Q86UP9 236 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 Q8IYB0 196 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 DYNAPQ8N1N2 210 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 ASCC1Q8N9N2 400 aaKnown RBP6.35□□□□□ -1.39
CDH3-209ENST00000569080 OR52N4Q8NGI2 321 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 OR52I1Q8NGK6 324 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 OR5R1Q8NH85 324 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 PIFOQ8TCI5 191 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 EMG1Q92979 244 aaKnown RBP6.35□□□□□ -1.39
CDH3-209ENST00000569080 FGGYQ96C11 551 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 RDH12Q96NR8 316 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 OPALINQ96PE5 141 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 SPACA5Q96QH8 159 aa6.35□□□□□ -1.39
CDH3-209ENST00000569080 MEGF9Q9H1U4 602 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms