RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 HHLA2Q9UM44 414 aa15.03■□□□□ -0
CLN3-237ENST00000569030 FAM96BQ9Y3D0 163 aa15.03■□□□□ -0
CLN3-237ENST00000569030 H0YAE9 185 aa15.02■□□□□ -0
CLN3-237ENST00000569030 K7N7A8 449 aa15.02■□□□□ -0
CLN3-237ENST00000569030 CLIC3O95833 236 aa15.02■□□□□ -0
CLN3-237ENST00000569030 ZNF20P17024 532 aa15.02■□□□□ -0
CLN3-237ENST00000569030 EEF1B2P24534 225 aaKnown RBP15.02■□□□□ -0
CLN3-237ENST00000569030 AZGP1P25311 298 aaKnown RBP15.02■□□□□ -0
CLN3-237ENST00000569030 SAA4P35542 130 aa15.02■□□□□ -0
CLN3-237ENST00000569030 RBP2P50120 134 aa15.02■□□□□ -0
CLN3-237ENST00000569030 ATP1B3P54709 279 aa15.02■□□□□ -0
CLN3-237ENST00000569030 ERVFRD-1P60508 538 aa15.02■□□□□ -0
CLN3-237ENST00000569030 BLMHQ13867 455 aa15.02■□□□□ -0
CLN3-237ENST00000569030 ZSCAN26Q16670 478 aa15.02■□□□□ -0
CLN3-237ENST00000569030 LPCAT4Q643R3 524 aa15.02■□□□□ -0
CLN3-237ENST00000569030 EGFL6Q8IUX8 553 aa15.02■□□□□ -0
CLN3-237ENST00000569030 MKXQ8IYA7 352 aa15.02■□□□□ -0
CLN3-237ENST00000569030 SYS1Q8N2H4 156 aa15.02■□□□□ -0
CLN3-237ENST00000569030 ZNF676Q8N7Q3 588 aa15.02■□□□□ -0
CLN3-237ENST00000569030 ZNF555Q8NEP9 628 aa15.02■□□□□ -0
CLN3-237ENST00000569030 OR13C3Q8NGS6 347 aa15.02■□□□□ -0
CLN3-237ENST00000569030 INPP5EQ9NRR6 644 aa15.02■□□□□ -0
CLN3-237ENST00000569030 C1RLQ9NZP8 487 aa15.02■□□□□ -0
CLN3-237ENST00000569030 RPL36Q9Y3U8 105 aaKnown RBP15.02■□□□□ -0
CLN3-237ENST00000569030 MEIOCA2RUB1 952 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 ZNF737O75373 536 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 CHRM2P08172 466 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 CCL3L1P16619 93 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 BCL3P20749 454 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 PRKACBP22694 351 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 MTCP1P56278 107 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 ZNF273Q14593 569 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 NCR3LG1Q68D85 454 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 MRPL48Q96GC5 212 aaKnown RBP15.01□□□□□ -0.01
CLN3-237ENST00000569030 RDH12Q96NR8 316 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 FAM234AQ9H0X4 552 aa15.01□□□□□ -0.01
CLN3-237ENST00000569030 RBFOX1Q9NWB1 397 aaKnown RBP15.01□□□□□ -0.01
CLN3-237ENST00000569030 MEX3AA1L020 520 aaKnown RBP15□□□□□ -0.01
CLN3-237ENST00000569030 SPRY1O43609 319 aaPredicted RBP15□□□□□ -0.01
CLN3-237ENST00000569030 ZFPL1O95159 310 aa15□□□□□ -0.01
CLN3-237ENST00000569030 CRYBA1P05813 215 aa15□□□□□ -0.01
CLN3-237ENST00000569030 FBP1P09467 338 aa15□□□□□ -0.01
CLN3-237ENST00000569030 LIMS3P0CW19 117 aa15□□□□□ -0.01
CLN3-237ENST00000569030 LIMS4P0CW20 117 aa15□□□□□ -0.01
CLN3-237ENST00000569030 CALCBP10092 127 aa15□□□□□ -0.01
CLN3-237ENST00000569030 PIPP12273 146 aaPredicted RBP15□□□□□ -0.01
CLN3-237ENST00000569030 POU3F4P49335 361 aa15□□□□□ -0.01
CLN3-237ENST00000569030 TAF9Q16594 264 aa15□□□□□ -0.01
CLN3-237ENST00000569030 KLHL22Q53GT1 634 aa15□□□□□ -0.01
CLN3-237ENST00000569030 CRIP3Q6Q6R5 217 aa15□□□□□ -0.01
CLN3-237ENST00000569030 ASCC1Q8N9N2 400 aaKnown RBP15□□□□□ -0.01
CLN3-237ENST00000569030 OR5D13Q8NGL4 314 aa15□□□□□ -0.01
CLN3-237ENST00000569030 CNIH3Q8TBE1 160 aa15□□□□□ -0.01
CLN3-237ENST00000569030 C17orf50Q8WW18 174 aa15□□□□□ -0.01
CLN3-237ENST00000569030 EMG1Q92979 244 aaKnown RBP15□□□□□ -0.01
CLN3-237ENST00000569030 RFT1Q96AA3 541 aa15□□□□□ -0.01
CLN3-237ENST00000569030 AJUBAQ96IF1 538 aa15□□□□□ -0.01
CLN3-237ENST00000569030 OPALINQ96PE5 141 aa15□□□□□ -0.01
CLN3-237ENST00000569030 SPACA5Q96QH8 159 aa15□□□□□ -0.01
CLN3-237ENST00000569030 MYCBPQ99417 103 aaPredicted RBP15□□□□□ -0.01
CLN3-237ENST00000569030 FGF20Q9NP95 211 aaPredicted RBP15□□□□□ -0.01
CLN3-237ENST00000569030 ZNRD1Q9P1U0 126 aa15□□□□□ -0.01
CLN3-237ENST00000569030 CAB39Q9Y376 341 aaPredicted RBP15□□□□□ -0.01
CLN3-237ENST00000569030 TMEM82A0PJX8 343 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 POM121CA8CG34 1229 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 ANGPTL7O43827 346 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 GPR137BO60478 399 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 DUSP1P28562 367 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 GTF2A1P52655 376 aaPredicted RBP14.99□□□□□ -0.01
CLN3-237ENST00000569030 DLX6P56179 175 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 ACSM1Q08AH1 577 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 PDZK1IP1Q13113 114 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 RCN1Q15293 331 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 ZNF691Q5VV52 312 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 SHISA2Q6UWI4 295 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 C17orf107Q6ZR85 190 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 LHFPL2Q6ZUX7 228 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 OR13C9Q8NGT0 318 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 DYRK2Q92630 601 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 PDCD1LG2Q9BQ51 273 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 SF3B6Q9Y3B4 125 aaKnown RBP14.99□□□□□ -0.01
CLN3-237ENST00000569030 MMP24Q9Y5R2 645 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 VWFP04275 2813 aa14.99□□□□□ -0.01
CLN3-237ENST00000569030 IGKV1-12A0A0C4DH73 117 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 HAND1O96004 215 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 IGKV1D-12P01611 117 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 MT-ND2P03891 347 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 PEX2P28328 305 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 ETV1P50549 477 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 GBX2P52951 348 aaPredicted RBP14.98□□□□□ -0.01
CLN3-237ENST00000569030 RAG2P55895 527 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 Q8IYB0 196 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 OR8H2Q8N162 312 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 FAM58AQ8N1B3 248 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 OR52N4Q8NGI2 321 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 OR5AK2Q8NH90 309 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 CYGBQ8WWM9 190 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 SPSB1Q96BD6 273 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 JAM3Q9BX67 310 aa14.98□□□□□ -0.01
CLN3-237ENST00000569030 DPAGT1Q9H3H5 408 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 168.4 ms