RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CDKN1AP38936 164 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GABRA2P47869 451 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 HTR6P50406 440 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 HNRNPA3P51991 378 aaKnown RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 UCNP55089 124 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 FAM3BP58499 235 aaPredicted RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 LINC00205P59089 165 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 OSTNP61366 133 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GNG3P63215 75 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 PAFAH1B2P68402 229 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 HIST1H3AP68431 136 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 MRPS34P82930 218 aaKnown RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 TLE3Q04726 772 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SRSF1Q07955 248 aaKnown RBP eCLIP2.81□□□□□ -1.96
VPS35-208ENST00000568612 PLCXD2Q0VAA5 305 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SMAGPQ0VAQ4 97 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GAGE5Q13069 117 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GAGE6Q13070 117 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 P2RY6Q15077 328 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 ELOBQ15370 118 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 TWIST1Q15672 202 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 ZSWIM7Q19AV6 140 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 ANKRD55Q3KP44 614 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 LRRC10Q5BKY1 277 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 CT45A2Q5DJT8 189 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 C9orf50Q5SZB4 431 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GLT8D1Q68CQ7 371 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 FAHD1Q6P587 224 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GJB7Q6PEY0 223 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 PODNL1Q6PEZ8 512 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 UNQ5815/PRO19632Q6UWF5 114 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 TOMM20LQ6UXN7 152 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 NHLRC1Q6VVB1 395 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 TPRG1Q6ZUI0 275 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 DET1Q7L5Y6 550 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 DPY19L4Q7Z388 723 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 NEGR1Q7Z3B1 354 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 TMEM179BQ7Z7N9 219 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 DOLPP1Q86YN1 238 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 GPSM1Q86YR5 675 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 FBXO16Q8IX29 292 aaPredicted RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 DND1Q8IYX4 353 aaKnown RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 TOMM5Q8N4H5 51 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SLC5A8Q8N695 610 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 C5orf17Q8NAS9 161 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 NOXO1Q8NFA2 376 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 OR2T12Q8NG77 320 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 OR4K2Q8NGD2 314 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 MRAPQ8TCY5 172 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 CLEC4CQ8WTT0 213 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 Q8WTZ3 238 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 THEM6Q8WUY1 208 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 NRGNQ92686 78 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 FRZBQ92765 325 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 TMEM106AQ96A25 262 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 APH1AQ96BI3 265 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SEH1LQ96EE3 360 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 CAPNS2Q96L46 248 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 ZNF75AQ96N20 296 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 IP6K3Q96PC2 410 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 TSPAN32Q96QS1 320 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 OR6C1Q96RD1 312 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 VAMP8Q9BV40 100 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SLC39A8Q9C0K1 460 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SLC25A51Q9H1U9 297 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 ATG5Q9H1Y0 275 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 WDR13Q9H1Z4 485 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 TXNIPQ9H3M7 391 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 C1orf198Q9H425 327 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 PLAC1Q9HBJ0 212 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 Q9N2K0 584 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 RAB9BQ9NP90 201 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SPANXA1Q9NS26 97 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 LIN7CQ9NUP9 197 aaKnown RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 NECAP2Q9NVZ3 263 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 MRPL16Q9NX20 251 aaKnown RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 ANKRD10Q9NXR5 420 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 ZNF586Q9NXT0 402 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 FKBP11Q9NYL4 201 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 BET1LQ9NYM9 111 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 CCDC167Q9P0B6 97 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 ZNF319Q9P2F9 582 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 UQCR10Q9UDW1 63 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 ERG28Q9UKR5 140 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 MMP17Q9ULZ9 603 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 PLAGL1Q9UM63 463 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 FUT9Q9Y231 359 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 B3GALT5Q9Y2C3 310 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 NTNG1Q9Y2I2 539 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 UFC1Q9Y3C8 167 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 MRPS16Q9Y3D3 137 aaKnown RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 AK6Q9Y3D8 172 aaKnown RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 THSD7BQ9C0I4 1608 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 SBF1O95248 1867 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 ANK1P16157 1881 aa2.81□□□□□ -1.96
VPS35-208ENST00000568612 HELZP42694 1942 aaKnown RBP2.81□□□□□ -1.96
VPS35-208ENST00000568612 ITGB4P16144 1822 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TNRC6CQ9HCJ0 1690 aaKnown RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 hCG_1818297A0A087WSY0 165 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms