RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 OR13C9Q8NGT0 318 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 FBLIM1Q8WUP2 373 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 NRG4Q8WWG1 115 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 GATAD2BQ8WXI9 593 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 RGP1Q92546 391 aaPredicted RBP12.34□□□□□ -0.43
VPS39-210ENST00000568357 TNFRSF14Q92956 283 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 SPSB1Q96BD6 273 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 TMEM80Q96HE8 168 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 OPALINQ96PE5 141 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 ZCCHC4Q9H5U6 513 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 SIRT7Q9NRC8 400 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 C19orf12Q9NSK7 152 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 CAB39Q9Y376 341 aaPredicted RBP12.34□□□□□ -0.43
VPS39-210ENST00000568357 SIRT4Q9Y6E7 314 aaPredicted RBP12.34□□□□□ -0.43
VPS39-210ENST00000568357 HSPE1-MOB4S4R3N1 261 aa12.34□□□□□ -0.43
VPS39-210ENST00000568357 A0A1W2PQ09 198 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 IRGMA1A4Y4 181 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 TMEM89A2RUT3 159 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 RNASEK-C17orf49H0YIS7 233 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 CLDN34H7C241 214 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 LALBAP00709 142 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 MT-ND2P03891 347 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 CCDC159P0C7I6 412 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 BCL3P20749 454 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 POU3F4P49335 361 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 ACTG1P63261 375 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 COL10A1Q03692 680 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 SLC34A1Q06495 639 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 PDZK1IP1Q13113 114 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 RPL22L1Q6P5R6 122 aaKnown RBP12.33□□□□□ -0.44
VPS39-210ENST00000568357 TMPRSS11AQ6ZMR5 421 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 LHFPL2Q6ZUX7 228 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 C8orf59Q8N0T1 100 aaPredicted RBP12.33□□□□□ -0.44
VPS39-210ENST00000568357 PARP16Q8N5Y8 322 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 OR4M1Q8NGD0 313 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 TFAP2CQ92754 450 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 GCDHQ92947 438 aaPredicted RBP12.33□□□□□ -0.44
VPS39-210ENST00000568357 ZDHHC16Q969W1 377 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 RFT1Q96AA3 541 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 SPACA5Q96QH8 159 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 COMMD4Q9H0A8 199 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 RBFOX1Q9NWB1 397 aaKnown RBP12.33□□□□□ -0.44
VPS39-210ENST00000568357 BABAM2Q9NXR7 383 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 IL36RNQ9UBH0 155 aa12.33□□□□□ -0.44
VPS39-210ENST00000568357 TRBV23-1A0A0A0MS06 115 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 IGKV1-12A0A0C4DH73 117 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 A0A0U1RQK1 487 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 ERICH4A6NGS2 130 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 K7N7A8 449 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 M0R1W7 72 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 OGG1O15527 345 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 HOXA3O43365 443 aaPredicted RBP12.32□□□□□ -0.44
VPS39-210ENST00000568357 XPNPEP2O43895 674 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 ZNF737O75373 536 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 IGKV1D-12P01611 117 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 TK1P04183 234 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 RNASE1P07998 156 aaKnown RBP12.32□□□□□ -0.44
VPS39-210ENST00000568357 RPSAP08865 295 aaKnown RBP12.32□□□□□ -0.44
VPS39-210ENST00000568357 CALCBP10092 127 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 ST3GAL4Q11206 333 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 CDK5R1Q15078 307 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 CCDC58Q4VC31 144 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 TMEM200BQ69YZ2 307 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 METAP1DQ6UB28 335 aaPredicted RBP12.32□□□□□ -0.44
VPS39-210ENST00000568357 Q6YL49 198 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 SERPINA12Q8IW75 414 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 MKXQ8IYA7 352 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 FAM185AQ8N0U4 392 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 C11orf42Q8N5U0 333 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 ZNF485Q8NCK3 441 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 OR5D14Q8NGL3 314 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 RPS4Y2Q8TD47 263 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 HAVCR2Q8TDQ0 301 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 DHDHQ9UQ10 334 aa12.32□□□□□ -0.44
VPS39-210ENST00000568357 EXOSC1Q9Y3B2 195 aaKnown RBP12.32□□□□□ -0.44
VPS39-210ENST00000568357 A0A1W2PRD5 423 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 A0A1W2PRF3 423 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 A0A1W2PRM7 423 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 TMEM82A0PJX8 343 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 ANGPTL7O43827 346 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 ALX3O95076 343 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 CHRM2P08172 466 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 OCM2P0CE71 109 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 OCMP0CE72 109 aaPredicted RBP12.31□□□□□ -0.44
VPS39-210ENST00000568357 MYL12AP19105 171 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 DUSP1P28562 367 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 SOX2P48431 317 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 COMPP49747 757 aaPredicted RBP12.31□□□□□ -0.44
VPS39-210ENST00000568357 ERVFRD-1P60508 538 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 RPL31P62899 125 aaKnown RBP12.31□□□□□ -0.44
VPS39-210ENST00000568357 KLRD1Q13241 179 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 ASPHD2Q6ICH7 369 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 FAM58AQ8N1B3 248 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 PNKDQ8N490 385 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 OR5D18Q8NGL1 313 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 TSEN15Q8WW01 171 aaKnown RBP12.31□□□□□ -0.44
VPS39-210ENST00000568357 TAF15Q92804 592 aaKnown RBP eCLIP12.31□□□□□ -0.44
VPS39-210ENST00000568357 EMG1Q92979 244 aaKnown RBP12.31□□□□□ -0.44
VPS39-210ENST00000568357 SLC25A28Q96A46 364 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 FAM234AQ9H0X4 552 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms