RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ADAT3Q96EY9 351 aaPredicted RBP16.93■□□□□ 0.3
CLN3-219ENST00000565778 C4orf36Q96KX1 117 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 Q96MT0 163 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 MYCBPQ99417 103 aaPredicted RBP16.93■□□□□ 0.3
CLN3-219ENST00000565778 MPZL2O60487 215 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 CYB5AP00167 134 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 ISG15P05161 165 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 OCM2P0CE71 109 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 OCMP0CE72 109 aaPredicted RBP16.92■□□□□ 0.3
CLN3-219ENST00000565778 PIPP12273 146 aaPredicted RBP16.92■□□□□ 0.3
CLN3-219ENST00000565778 CCL3L1P16619 93 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 ATF1P18846 271 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 MTCP1P56278 107 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 NANOS3P60323 173 aaKnown RBP16.92■□□□□ 0.3
CLN3-219ENST00000565778 ERVFRD-1P60508 538 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 SRSF4Q08170 494 aaKnown RBP16.92■□□□□ 0.3
CLN3-219ENST00000565778 MIDNQ504T8 468 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 ENTHD1Q8IYW4 607 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 DNAAF1Q8NEP3 725 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 RNF114Q9Y508 228 aa16.92■□□□□ 0.3
CLN3-219ENST00000565778 LOC100130705A0A1B0GUX0 176 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 BAG2O95816 211 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 PRKACBP22694 351 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 CCR9P51686 369 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 EDDM3BP56851 147 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 ACTA2P62736 377 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 ACTG2P63267 376 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 GALEQ14376 348 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 GDPD3Q7L5L3 318 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 PQLC1Q8N2U9 271 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 C11orf42Q8N5U0 333 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 ZSCAN4Q8NAM6 433 aaPredicted RBP16.91■□□□□ 0.3
CLN3-219ENST00000565778 BEND2Q8NDZ0 799 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 OR5R1Q8NH85 324 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 RHOXF1Q8NHV9 184 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 LINC01006Q8NI28 216 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 EMG1Q92979 244 aaKnown RBP16.91■□□□□ 0.3
CLN3-219ENST00000565778 PELI1Q96FA3 418 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 AMBNQ9NP70 447 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 VPREB3Q9UKI3 123 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 HHLA2Q9UM44 414 aa16.91■□□□□ 0.3
CLN3-219ENST00000565778 IGKV1-9A0A0C4DH69 117 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 FADS2O95864 444 aaKnown RBP16.9■□□□□ 0.3
CLN3-219ENST00000565778 DBTP11182 482 aaKnown RBP16.9■□□□□ 0.3
CLN3-219ENST00000565778 GABRB1P18505 474 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 AZGP1P25311 298 aaKnown RBP16.9■□□□□ 0.3
CLN3-219ENST00000565778 POU3F4P49335 361 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 LGALS4P56470 323 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 ZNF91Q05481 1191 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 ALKBH1Q13686 389 aaKnown RBP16.9■□□□□ 0.3
CLN3-219ENST00000565778 ZNF273Q14593 569 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 DHRS7BQ6IAN0 325 aaPredicted RBP16.9■□□□□ 0.3
CLN3-219ENST00000565778 UTS2BQ765I0 119 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 Q8IYB0 196 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 ZNF676Q8N7Q3 588 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 OR13C3Q8NGS6 347 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 C17orf50Q8WW18 174 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 WFDC12Q8WWY7 111 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 SNX22Q96L94 193 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 SSX3Q99909 188 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 ALG8Q9BVK2 526 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 FAM118AQ9NWS6 357 aa16.9■□□□□ 0.3
CLN3-219ENST00000565778 CALCBP10092 127 aa16.89■□□□□ 0.29
CLN3-219ENST00000565778 COX7A1P24310 79 aa16.89■□□□□ 0.29
CLN3-219ENST00000565778 TGFBR2P37173 567 aa16.89■□□□□ 0.29
CLN3-219ENST00000565778 NPBWR2P48146 333 aa16.89■□□□□ 0.29
CLN3-219ENST00000565778 BRICD5Q6PL45 260 aa16.89■□□□□ 0.29
CLN3-219ENST00000565778 LHFPL2Q6ZUX7 228 aa16.89■□□□□ 0.29
CLN3-219ENST00000565778 FAM58AQ8N1B3 248 aa16.89■□□□□ 0.29
CLN3-219ENST00000565778 OR10AC1Q8NH08 325 aa16.89■□□□□ 0.29
CLN3-219ENST00000565778 MEGF9Q9H1U4 602 aa16.89■□□□□ 0.29
CLN3-219ENST00000565778 ISG20L2Q9H9L3 353 aaKnown RBP16.89■□□□□ 0.29
CLN3-219ENST00000565778 MYRFQ9Y2G1 1151 aa16.89■□□□□ 0.29
CLN3-219ENST00000565778 MEX3AA1L020 520 aaKnown RBP16.88■□□□□ 0.29
CLN3-219ENST00000565778 OR4C45A6NMZ5 311 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 H3BUX3 64 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 ZNF737O75373 536 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 HAND1O96004 215 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 BCL3P20749 454 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 DUSP1P28562 367 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 ZNF782Q6ZMW2 699 aaPredicted RBP16.88■□□□□ 0.29
CLN3-219ENST00000565778 Q6ZSV7 163 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 OR8H2Q8N162 312 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 OR51A4Q8NGJ6 313 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 RFT1Q96AA3 541 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 SPSB1Q96BD6 273 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 PPA2Q9H2U2 334 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 RBFOX1Q9NWB1 397 aaKnown RBP16.88■□□□□ 0.29
CLN3-219ENST00000565778 GLS2Q9UI32 602 aa16.88■□□□□ 0.29
CLN3-219ENST00000565778 RPL36Q9Y3U8 105 aaKnown RBP16.88■□□□□ 0.29
CLN3-219ENST00000565778 C17orf98A8MV24 154 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 PRKACAP17612 351 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 GABRR1P24046 479 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 PEX2P28328 305 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 BMXP51813 675 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 SNU13P55769 128 aaKnown RBP16.87■□□□□ 0.29
CLN3-219ENST00000565778 RAB40BQ12829 278 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 PDZK1IP1Q13113 114 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 EDDM3AQ14507 147 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 KLHL22Q53GT1 634 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms