RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 DYNLT3P51808 116 aa13.82□□□□□ -0.2
CLN3-216ENST00000565316 YIPF7Q8N8F6 280 aa13.82□□□□□ -0.2
CLN3-216ENST00000565316 ASCC1Q8N9N2 400 aaKnown RBP13.82□□□□□ -0.2
CLN3-216ENST00000565316 CCDC54Q8NEL0 328 aa13.82□□□□□ -0.2
CLN3-216ENST00000565316 TRMT10AQ8TBZ6 339 aaKnown RBP13.82□□□□□ -0.2
CLN3-216ENST00000565316 CEP19Q96LK0 163 aa13.82□□□□□ -0.2
CLN3-216ENST00000565316 CADM1Q9BY67 442 aaKnown RBP13.82□□□□□ -0.2
CLN3-216ENST00000565316 GABARAPL1Q9H0R8 117 aa13.82□□□□□ -0.2
CLN3-216ENST00000565316 FAM230AA0A1W2PPH8 454 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 A0A1W2PQL4 384 aaPredicted RBP13.81□□□□□ -0.2
CLN3-216ENST00000565316 TMEM82A0PJX8 343 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 METTL15A6NJ78 407 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 SULT1C4O75897 302 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 RPP14O95059 124 aaKnown RBP13.81□□□□□ -0.2
CLN3-216ENST00000565316 ARG1P05089 322 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 OR2T7P0C7T2 308 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 IGHV1-8P0DP01 117 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 RAB13P51153 203 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 FUT6P51993 359 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 MEF2CQ06413 473 aaPredicted RBP13.81□□□□□ -0.2
CLN3-216ENST00000565316 TCF23Q7RTU1 214 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 OR8H2Q8N162 312 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 RPS4Y2Q8TD47 263 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 SNX22Q96L94 193 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 CHST5Q9GZS9 411 aa13.81□□□□□ -0.2
CLN3-216ENST00000565316 PLXNB1O43157 2135 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 SYT7O43581 403 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 GATBO75879 557 aaKnown RBP13.8□□□□□ -0.2
CLN3-216ENST00000565316 HTR1FP30939 366 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 HABP2Q14520 560 aaPredicted RBP13.8□□□□□ -0.2
CLN3-216ENST00000565316 CNN3Q15417 329 aaKnown RBP13.8□□□□□ -0.2
CLN3-216ENST00000565316 FAM189A2Q15884 450 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 SSX2Q16385 188 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 FBLN7Q53RD9 439 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 GDPD3Q7L5L3 318 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 SLAMF9Q96A28 289 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 C10orf35Q96D05 121 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 NKX3-1Q99801 234 aaPredicted RBP13.8□□□□□ -0.2
CLN3-216ENST00000565316 PLEKHA1Q9HB21 404 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 ABCB10Q9NRK6 738 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 ENOPH1Q9UHY7 261 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 PITPNC1Q9UKF7 332 aa13.8□□□□□ -0.2
CLN3-216ENST00000565316 FBXO24O75426 580 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 CD28P10747 220 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 EDDM3BP56851 147 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 ISL1P61371 349 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 ODF4Q2M2E3 257 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 PLA1AQ53H76 456 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 SLC25A26Q70HW3 274 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 ZDHHC13Q8IUH4 622 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 EGFL6Q8IUX8 553 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 PRSS35Q8N3Z0 413 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 RNF166Q96A37 237 aaPredicted RBP13.79□□□□□ -0.2
CLN3-216ENST00000565316 ZNF714Q96N38 554 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 TBX5Q99593 518 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 WNT10AQ9GZT5 417 aa13.79□□□□□ -0.2
CLN3-216ENST00000565316 hADV38S2A0JD32 116 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 MEX3AA1L020 520 aaKnown RBP13.78□□□□□ -0.2
CLN3-216ENST00000565316 SERPINA3P01011 423 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 FASP25445 335 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 EMX1Q04741 257 aaPredicted RBP13.78□□□□□ -0.2
CLN3-216ENST00000565316 TMED1Q13445 227 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 MINOS1Q5TGZ0 78 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 TMEM219Q86XT9 240 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 Q8IYB0 196 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 DNAAF1Q8NEP3 725 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 OR52N4Q8NGI2 321 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 PRSS22Q9GZN4 317 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 LINC00312Q9Y6C7 94 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 SESN1Q9Y6P5 492 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 MINOS1-NBL1R4GNA1 71 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 DSCAML1Q8TD84 2053 aa13.78□□□□□ -0.2
CLN3-216ENST00000565316 ADARB2-AS1A8MUL3 147 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 FAM90A22PA8MWA6 464 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 H3BSH0 61 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 APOL3O95236 402 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 HAND1O96004 215 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 POLR2IP36954 125 aaKnown RBP13.77□□□□□ -0.21
CLN3-216ENST00000565316 KIR3DL2P43630 455 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 ZNF91Q05481 1191 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 REC114Q7Z4M0 266 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 NDUFA11Q86Y39 141 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 ENTHD1Q8IYW4 607 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 OR10H4Q8NGA5 316 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 BCAS4Q8TDM0 211 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 PP6455Q8WZ26 134 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 BORCS8Q96FH0 119 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 CIB1Q99828 191 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 ADI1Q9BV57 179 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 GABARAPL3Q9BY60 117 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 IL36RNQ9UBH0 155 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 AP4S1Q9Y587 144 aa13.77□□□□□ -0.21
CLN3-216ENST00000565316 TRBV2A0A0J9YWF9 115 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 LOC107986453A0A1B0GWG9 222 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 XPNPEP2O43895 674 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 PSPNO60542 156 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 IGHA1P01876 353 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 UBCP0CG48 685 aaKnown RBP13.76□□□□□ -0.21
CLN3-216ENST00000565316 PEX2P28328 305 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 OR12D2P58182 307 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms