RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 C9orf72Q96LT7 481 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 HSD17B10Q99714 261 aaKnown RBP2.81□□□□□ -1.96
LINC00560-201ENST00000564593 Q9H521 79 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 WFDC1Q9HC57 220 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 MRPL40Q9NQ50 206 aaKnown RBP2.81□□□□□ -1.96
LINC00560-201ENST00000564593 EURLQ9NYK6 297 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 STK38LQ9Y2H1 464 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 SHROOM3Q8TF72 1996 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 PATJQ8NI35 1801 aa2.81□□□□□ -1.96
LINC00560-201ENST00000564593 COL4A5P29400 1685 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 MYO16Q9Y6X6 1858 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 TRAV19A0A0A6YYK7 116 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 IGKV6-21A0A0C4DH24 114 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 ANKRD65E5RJM6 399 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 DNASE2O00115 360 aaPredicted RBP2.8□□□□□ -1.96
LINC00560-201ENST00000564593 GABRPO00591 440 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 PLPP1O14494 284 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 KLHL2O95198 593 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 APOEP02649 317 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 APCSP02743 223 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 TAC1P20366 129 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 USF1P22415 310 aaPredicted RBP2.8□□□□□ -1.96
LINC00560-201ENST00000564593 SERPINB8P50452 374 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 DYNLT1P63172 113 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 XIAPP98170 497 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 ZNF33AQ06730 810 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 CCDC153Q494R4 210 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 PIP5KL1Q5T9C9 394 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 Q5W150 140 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 LINC00523Q86TU6 105 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 HORMAD1Q86X24 394 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 ZNF547Q8IVP9 402 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 NKAIN4Q8IVV8 208 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 CTAGE3PQ8IX95 158 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 VKORC1L1Q8N0U8 176 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 ARHGAP18Q8N392 663 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 FBXO36Q8NEA4 188 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 OR5B17Q8NGF7 314 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 PPTC7Q8NI37 304 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 GPX8Q8TED1 209 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 CA5BP1Q8WTZ4 195 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 RPEQ96AT9 228 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 TMIGD2Q96BF3 282 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 CMTM5Q96DZ9 223 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 NARS2Q96I59 477 aaKnown RBP2.8□□□□□ -1.96
LINC00560-201ENST00000564593 QKIQ96PU8 341 aaKnown RBP eCLIP2.8□□□□□ -1.96
LINC00560-201ENST00000564593 VAT1Q99536 393 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 SERPINI1Q99574 410 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 MYOZ1Q9NP98 299 aaPredicted RBP2.8□□□□□ -1.96
LINC00560-201ENST00000564593 TSSC4Q9Y5U2 329 aaPredicted RBP2.8□□□□□ -1.96
LINC00560-201ENST00000564593 SCN1AP35498 2009 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 CEP350Q5VT06 3117 aa2.8□□□□□ -1.96
LINC00560-201ENST00000564593 A0A0G2JND7 137 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 A0A0J9YXV3 536 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 TMEM150BA6NC51 233 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 TMEM114B3SHH9 223 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 F8VP50 259 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 M0QZ92 97 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 BET1O15155 118 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 E2F6O75461 281 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 WISP3O95389 354 aaPredicted RBP2.79□□□□□ -1.96
LINC00560-201ENST00000564593 CXCL8P10145 99 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 HOXB8P17481 243 aaPredicted RBP2.79□□□□□ -1.96
LINC00560-201ENST00000564593 MIPP30301 263 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 RPA3P35244 121 aaPredicted RBP2.79□□□□□ -1.96
LINC00560-201ENST00000564593 HSPA13P48723 471 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 CLDN18P56856 261 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 RPL26P61254 145 aaKnown RBP2.79□□□□□ -1.96
LINC00560-201ENST00000564593 NAA20P61599 178 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 MAPRE2Q15555 327 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 GOLGA7BQ2TAP0 167 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 C5orf47Q569G3 176 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 SPANXN3Q5MJ09 141 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 SPOPLQ6IQ16 392 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 WDFY1Q8IWB7 410 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 LGI3Q8N145 548 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 C4orf33Q8N1A6 199 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 GPR26Q8NDV2 337 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 OR4K5Q8NGD3 323 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 OR51F2Q8NH61 342 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 TCP10LQ8TDR4 215 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 C10orf82Q8WW14 230 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 DNAJC9Q8WXX5 260 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 ZNF707Q96C28 371 aaPredicted RBP2.79□□□□□ -1.96
LINC00560-201ENST00000564593 RILPQ96NA2 401 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 OLFM3Q96PB7 478 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 RNF157Q96PX1 679 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 OR52D1Q9H346 318 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 C8orf33Q9H7E9 229 aaPredicted RBP2.79□□□□□ -1.96
LINC00560-201ENST00000564593 TMEM27Q9HBJ8 222 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 ZC4H2Q9NQZ6 224 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 YARS2Q9Y2Z4 477 aaKnown RBP2.79□□□□□ -1.96
LINC00560-201ENST00000564593 EP400Q96L91 3159 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 PTPRJQ12913 1337 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 NRCAMQ92823 1304 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 CASP8AP2Q9UKL3 1982 aa2.79□□□□□ -1.96
LINC00560-201ENST00000564593 IGHV1OR15-9A0A0B4J2B8 117 aa2.78□□□□□ -1.96
LINC00560-201ENST00000564593 GABRR3A8MPY1 467 aa2.78□□□□□ -1.96
LINC00560-201ENST00000564593 VGLL3A8MV65 326 aa2.78□□□□□ -1.96
LINC00560-201ENST00000564593 GOLGA8MH3BSY2 632 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms