RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 GLS2Q9UI32 602 aa11.05□□□□□ -0.64
CLK3-216ENST00000564468 IGHV3OR16-10A0A075B7F0 116 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 IGKV1-9A0A0C4DH69 117 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 E9PI62 339 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 M0R1W7 72 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 MAGEB3O15480 346 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 POU3F4P49335 361 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 GUCA2AQ02747 115 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 ST3GAL4Q11206 333 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 BAMBIQ13145 260 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 CDK5R1Q15078 307 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 METAP1DQ6UB28 335 aaPredicted RBP11.04□□□□□ -0.64
CLK3-216ENST00000564468 VMO1Q7Z5L0 202 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 BCL6BQ8N143 479 aaPredicted RBP11.04□□□□□ -0.64
CLK3-216ENST00000564468 FGFRL1Q8N441 504 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 STX19Q8N4C7 294 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 CD177Q8N6Q3 437 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 OR13C9Q8NGT0 318 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 TFAP2CQ92754 450 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 GGHQ92820 318 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 EMG1Q92979 244 aaKnown RBP11.04□□□□□ -0.64
CLK3-216ENST00000564468 LHX4Q969G2 390 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 ZDHHC16Q969W1 377 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 SLAMF9Q96A28 289 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 SEBOXQ9HB31 216 aaPredicted RBP11.04□□□□□ -0.64
CLK3-216ENST00000564468 NOX4Q9NPH5 578 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 NKX1-2Q9UD57 310 aaPredicted RBP11.04□□□□□ -0.64
CLK3-216ENST00000564468 PCDHGB5Q9Y5G0 923 aa11.04□□□□□ -0.64
CLK3-216ENST00000564468 KIAA2026Q5HYC2 2103 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 IGHV1-69DA0A0B4J2H0 117 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 CENPVL3A0A0U1RRI6 287 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 hCG_1809904A0A1W2PP81 198 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 A0A1W2PPE2 198 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 A0A1W2PR64 198 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 A0A1W2PRV1 198 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 OGG1O15527 345 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 SULT1B1O43704 296 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 IGHV1-69P01742 117 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 TFF1P04155 84 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 TK1P04183 234 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 HCKP08631 526 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 GNAO1P09471 354 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 PRTN3P24158 256 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 GTF2A1P52655 376 aaPredicted RBP11.03□□□□□ -0.64
CLK3-216ENST00000564468 TAS2R43P59537 309 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 RPL31P62899 125 aaKnown RBP11.03□□□□□ -0.64
CLK3-216ENST00000564468 UBA52P62987 128 aaKnown RBP11.03□□□□□ -0.64
CLK3-216ENST00000564468 ACTG1P63261 375 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 PDZK1IP1Q13113 114 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 OR2G6Q5TZ20 316 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 BRD3OSQ6XYD6 125 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 SAXO1Q8IYX7 474 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 FAM58AQ8N1B3 248 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 ZDHHC22Q8N966 263 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 BPIFB6Q8NFQ5 453 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 OR5D13Q8NGL4 314 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 RPS4Y2Q8TD47 263 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 FBLIM1Q8WUP2 373 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 SLC25A28Q96A46 364 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 METTL8Q9H825 291 aaKnown RBP11.03□□□□□ -0.64
CLK3-216ENST00000564468 PSORS1C1Q9UIG5 152 aa11.03□□□□□ -0.64
CLK3-216ENST00000564468 CLDN34H7C241 214 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 K7N7A8 449 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 MYL12BO14950 172 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 SPRY1O43609 319 aaPredicted RBP11.02□□□□□ -0.65
CLK3-216ENST00000564468 INMTO95050 263 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 RAB3AP20336 220 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 EEF1B2P24534 225 aaKnown RBP11.02□□□□□ -0.65
CLK3-216ENST00000564468 SPIN3Q5JUX0 258 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 NCR3LG1Q68D85 454 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 FAM185AQ8N0U4 392 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 BATF2Q8N1L9 274 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.02□□□□□ -0.65
CLK3-216ENST00000564468 ASCC1Q8N9N2 400 aaKnown RBP11.02□□□□□ -0.65
CLK3-216ENST00000564468 ZSCAN4Q8NAM6 433 aaPredicted RBP11.02□□□□□ -0.65
CLK3-216ENST00000564468 PPP1R35Q8TAP8 253 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 SMIM19Q96E16 107 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 SNX22Q96L94 193 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 ZNF48Q96MX3 618 aaPredicted RBP11.02□□□□□ -0.65
CLK3-216ENST00000564468 PRDM13Q9H4Q3 707 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 UNKLQ9H9P5 680 aaKnown RBP11.02□□□□□ -0.65
CLK3-216ENST00000564468 ESM1Q9NQ30 184 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 SCN3BQ9NY72 215 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 ZNF281Q9Y2X9 895 aa11.02□□□□□ -0.65
CLK3-216ENST00000564468 DNAJC9-AS1A6NH13 148 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 WIPF1O43516 503 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 XPNPEP2O43895 674 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 CEBPDP49716 269 aaPredicted RBP11.01□□□□□ -0.65
CLK3-216ENST00000564468 BMXP51813 675 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 COL10A1Q03692 680 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 ZNF146Q15072 292 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 KISS1Q15726 138 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 DEFB112Q30KQ8 113 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 C12orf54Q6X4T0 127 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 AHSA2Q719I0 299 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 GDPD3Q7L5L3 318 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 GCDHQ92947 438 aaPredicted RBP11.01□□□□□ -0.65
CLK3-216ENST00000564468 RFT1Q96AA3 541 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 ELL3Q9HB65 397 aaPredicted RBP11.01□□□□□ -0.65
CLK3-216ENST00000564468 SIRT7Q9NRC8 400 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms