RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TXNL1O43396 289 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 DANCRP0C864 163 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 ZNF728P0DKX0 622 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 NQO2P16083 231 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 ITGA3P26006 1051 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 RSU1Q15404 277 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 KCNMB1Q16558 191 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 PP6455Q8WZ26 134 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 KCNIP3Q9Y2W7 256 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 V9GYS6 101 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 EML6Q6ZMW3 1958 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 SCRG1O75711 98 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 ZFAND5O76080 213 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 IGLV3-1P01715 115 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 MT-ND4LP03901 98 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 FABP1P07148 127 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 CELA2AP08217 269 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 ZNF574Q6ZN55 896 aaPredicted RBP11.51□□□□□ -0.57
CLN3-210ENST00000563874 ADPRHL1Q8NDY3 354 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 RASL10BQ96S79 203 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 SCRT1Q9BWW7 348 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 NELFAQ9H3P2 528 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 PPP1R14DQ9NXH3 145 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 ZDHHC8Q9ULC8 765 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 POMT1Q9Y6A1 747 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 E5RGE8 158 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 TMEM11P17152 192 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 PPP1CCP36873 323 aaKnown RBP11.5□□□□□ -0.57
CLN3-210ENST00000563874 RPP30P78346 268 aaKnown RBP11.5□□□□□ -0.57
CLN3-210ENST00000563874 PIGYQ3MUY2 71 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 CPEB2Q7Z5Q1 589 aaKnown RBP11.5□□□□□ -0.57
CLN3-210ENST00000563874 NAA60Q9H7X0 242 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 PLEKHA2Q9HB19 425 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 C19orf12Q9NSK7 152 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 LUZP4Q9P127 313 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 NSG2Q9Y328 171 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 IGKV1-27A0A075B6S5 117 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 CCDC187A0A096LP49 1063 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.5□□□□□ -0.57
CLN3-210ENST00000563874 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.5□□□□□ -0.57
CLN3-210ENST00000563874 TMEM187Q14656 261 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 NSUN5P2Q63ZY6 315 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 MEX3BQ6ZN04 569 aaKnown RBP11.5□□□□□ -0.57
CLN3-210ENST00000563874 TMEM182Q6ZP80 229 aaPredicted RBP11.5□□□□□ -0.57
CLN3-210ENST00000563874 ZNF561Q8N587 486 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 FAM213BQ8TBF2 198 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 RNF138Q8WVD3 245 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 JSRP1Q96MG2 331 aaPredicted RBP11.5□□□□□ -0.57
CLN3-210ENST00000563874 GNRHR2Q96P88 292 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 DEFB126Q9BYW3 111 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 GSN-AS1Q9NRJ2 163 aa11.5□□□□□ -0.57
CLN3-210ENST00000563874 IGLV3-12A0A075B6K2 115 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 BORCS7-ASMTA0A0B4J1R7 106 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 A0A0U1RQV5 110 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 UBE2CO00762 179 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 GEMIN2O14893 280 aaKnown RBP11.49□□□□□ -0.57
CLN3-210ENST00000563874 PATE4P0C8F1 98 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 RAB5AP20339 215 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 AGAP20933 346 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 LSM6P62312 80 aaKnown RBP11.49□□□□□ -0.57
CLN3-210ENST00000563874 SLC22A25Q6T423 547 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 FBXW12Q6X9E4 464 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 NABP1Q96AH0 204 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 SPACA9Q96E40 222 aaPredicted RBP11.49□□□□□ -0.57
CLN3-210ENST00000563874 SLC2A9Q9NRM0 540 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 NECAP2Q9NVZ3 263 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 GPR37O15354 613 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 RRP8O43159 456 aaKnown RBP11.49□□□□□ -0.57
CLN3-210ENST00000563874 GDF9O60383 454 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 GLP1RP43220 463 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 SULT1A1P50225 295 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 CEBPGP53567 150 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 SLC35A1P78382 337 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 CLINT1Q14677 625 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 SUMF1Q8NBK3 374 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 RARRES2Q99969 163 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 PUS1Q9Y606 427 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLN3-210ENST00000563874 CELSR3Q9NYQ7 3312 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 SLC33A1O00400 549 aaPredicted RBP11.49□□□□□ -0.57
CLN3-210ENST00000563874 PHF1O43189 567 aaPredicted RBP11.49□□□□□ -0.57
CLN3-210ENST00000563874 SMIM6P0DI80 62 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 CTSSP25774 331 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 ZNF133P52736 654 aaPredicted RBP11.49□□□□□ -0.57
CLN3-210ENST00000563874 ARL6IP1Q15041 203 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 RAET1LQ5VY80 246 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 TCEAL3Q969E4 200 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 POM121Q96HA1 1249 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 METTL9Q9H1A3 318 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 KCNJ16Q9NPI9 418 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 HDGFL3Q9Y3E1 203 aa11.49□□□□□ -0.57
CLN3-210ENST00000563874 NPIPA2E9PIF3 369 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 NPIPA3F8WFD2 350 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 SEC11BP0C7V7 166 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 OMGP23515 440 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 PAX6P26367 422 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 ECI1P42126 302 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 P2RY1P47900 373 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 RAC1P63000 192 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 HMGN3Q15651 99 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 C5orf24Q7Z6I8 188 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms