RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ENPP6Q6UWR7 440 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 TOMM20LQ6UXN7 152 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 HEPN1Q6WQI6 88 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 Q6ZSR9 355 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 SLC25A26Q70HW3 274 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 COX15Q7KZN9 410 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 H2BFWTQ7Z2G1 175 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 COMMD6Q7Z4G1 85 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 LYG1Q8N1E2 194 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 HIST3H2BBQ8N257 126 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 BPIFB2Q8N4F0 458 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 RAB42Q8N4Z0 105 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 KCNRGQ8N5I3 272 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 JAGN1Q8N5M9 183 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 KLHDC1Q8N7A1 406 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 SLC35G3Q8N808 338 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 THAP8Q8NA92 274 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 SIDT2Q8NBJ9 832 aaKnown RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 OR10H4Q8NGA5 316 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 OR11H7Q8NGC8 314 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 OR10AD1Q8NGE0 317 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 OR4D5Q8NGN0 318 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 GNPDA2Q8TDQ7 276 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 TMEM106AQ96A25 262 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 REEP6Q96HR9 211 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 AKR1E2Q96JD6 320 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 CCDC115Q96NT0 180 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 GUCD1Q96NT3 240 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 SIGLEC12Q96PQ1 595 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 PEBP4Q96S96 227 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 PITX2Q99697 317 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 SIGMAR1Q99720 223 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 SYT11Q9BT88 431 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 FGFBP2Q9BYJ0 223 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 ZBP1Q9H171 429 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 CST9LQ9H4G1 147 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 TMEM38AQ9H6F2 299 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 Q9H8V8 135 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 PLEKHA1Q9HB21 404 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 RAB18Q9NP72 206 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 EXOSC4Q9NPD3 245 aaKnown RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 PIGVQ9NUD9 493 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 GPATCH2LQ9NWQ4 482 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 PSORS1C1Q9UIG5 152 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 ZNF391Q9UJN7 358 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 MCTS1Q9ULC4 181 aaKnown RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 FOXJ3Q9UPW0 622 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 C14orf166Q9Y224 244 aaKnown RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 ST3GAL6Q9Y274 331 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 BTRCQ9Y297 605 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 AK6Q9Y3D8 172 aaKnown RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 WDR45Q9Y484 360 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 OR51B2Q9Y5P1 312 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 URGCP-MRPS24S4R325 110 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 PARP4Q9UKK3 1724 aaKnown RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 ZNF638Q14966 1978 aaKnown RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 CHD5Q8TDI0 1954 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 MRC1P22897 1456 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 BORCS7-ASMTA0A0B4J1R7 106 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TRBV7-9A0A0J9YWB2 115 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 LOC285095A0A1B0GVY8 99 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 KANTRA0A1W2PQU2 76 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ANKRD20A5PA0PJZ0 165 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 GGT3PA6NGU5 568 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 FRG2CA6NGY1 282 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 SHISA7A6NL88 538 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 FAM166BA8MTA8 275 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 GPR31O00270 319 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TAAR5O14804 337 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 GSTZ1O43708 216 aaPredicted RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 EIF4E2O60573 245 aaKnown RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 ADAP1O75689 374 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TNFSF13O75888 250 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 SCELO95171 688 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 IGHG3P01860 377 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 SEMG1P04279 462 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 OR8U9P0C7N5 309 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 OR13C7P0DN81 318 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TDGF1P13385 188 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 AKR1C4P17516 323 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 NELFEP18615 380 aaKnown RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 FUT1P19526 365 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 CELP19835 753 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 CD22P20273 847 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 GSTM3P21266 225 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 GADD45AP24522 165 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 GDF1P27539 372 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 GABRR2P28476 465 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 RBMS1P29558 406 aaKnown RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 SRD5A2P31213 254 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TIA1P31483 386 aaKnown RBP eCLIP2.86□□□□□ -1.95
VPS35-203ENST00000562420 FCGR2BP31994 310 aaPredicted RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 ADRA1AP35348 466 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 SNCAP37840 140 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 CRYBB2P43320 205 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 RAB7AP51149 207 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 CNN1P51911 297 aaKnown RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 ARPP19P56211 112 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TCTAP57738 103 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 KRTAP10-5P60370 271 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms