RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 MITD1Q8WV92 249 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 NUDCD2Q8WVJ2 157 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 ERGIC1Q969X5 290 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 SLAMF9Q96A28 289 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 PIK3IP1Q96FE7 263 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 RNF170Q96K19 258 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 ZNF75AQ96N20 296 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 TAAR6Q96RI8 345 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 ADAT1Q9BUB4 502 aaKnown RBP6.47□□□□□ -1.37
VPS39-204ENST00000561818 CXXC4Q9H2H0 198 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 BANF2Q9H503 90 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 ZNF442Q9H7R0 627 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 RAB18Q9NP72 206 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 DECR2Q9NUI1 292 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 TMEM100Q9NV29 134 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 ZNF701Q9NV72 531 aaPredicted RBP6.47□□□□□ -1.37
VPS39-204ENST00000561818 RCC2Q9P258 522 aaKnown RBP6.47□□□□□ -1.37
VPS39-204ENST00000561818 KCNK7Q9Y2U2 307 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 STARD10Q9Y365 291 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 USP34Q70CQ2 3546 aa6.47□□□□□ -1.37
VPS39-204ENST00000561818 PHF3Q92576 2039 aaKnown RBP6.47□□□□□ -1.37
VPS39-204ENST00000561818 A0A1B0GWJ7 208 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 DUXBA0A1W2PPF3 345 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 PLSCR5A0PG75 271 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 ZNF732B4DXR9 585 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 E9PLN8 166 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 IFNL4K9M1U5 179 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 M0R233 179 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 SH2D1BO14796 132 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 DEGS1O15121 323 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 LYZL6O75951 148 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 SLC22A5O76082 557 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 IFNA7P01567 189 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 CTSDP07339 412 aaPredicted RBP6.46□□□□□ -1.38
VPS39-204ENST00000561818 FCGR3AP08637 254 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 PATE4P0C8F1 98 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 TNFSF4P23510 183 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 CALCRP30988 508 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 IDH3GP51553 393 aaPredicted RBP6.46□□□□□ -1.38
VPS39-204ENST00000561818 GPM6AP51674 278 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 AP2S1P53680 142 aaPredicted RBP6.46□□□□□ -1.38
VPS39-204ENST00000561818 TMEM50BP56557 158 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 HERV-K104P61576 105 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 EIF5AP63241 154 aaKnown RBP6.46□□□□□ -1.38
VPS39-204ENST00000561818 DHODHQ02127 395 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 GUCA2AQ02747 115 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 SRSF4Q08170 494 aaKnown RBP6.46□□□□□ -1.38
VPS39-204ENST00000561818 FCN2Q15485 313 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 OR8G1Q15617 311 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 ST3GAL2Q16842 350 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 SMIM21Q3B7S5 101 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 TMEM30BQ3MIR4 351 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 MOGAT2Q3SYC2 334 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 NKAPLQ5M9Q1 402 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 C9orf135Q5VTT2 229 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 MTFR2Q6P444 385 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 DHRS11Q6UWP2 260 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 TMEM108Q6UXF1 575 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 CD163Q86VB7 1156 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 LHFPL1Q86WI0 220 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 SGPP2Q8IWX5 399 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 SLC38A6Q8IZM9 456 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 GCNT2Q8N0V5 402 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 FBXL14Q8N1E6 418 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 DTX3Q8N9I9 347 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 OR8G5Q8NG78 346 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 OR5D18Q8NGL1 313 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 OR5M9Q8NGP3 310 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 OR1J1Q8NGS3 322 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 OR2T35Q8NGX2 323 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 FGFBP3Q8TAT2 258 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 GCDHQ92947 438 aaPredicted RBP6.46□□□□□ -1.38
VPS39-204ENST00000561818 STARD4Q96DR4 205 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 ABHD17AQ96GS6 310 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 SPACA5Q96QH8 159 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 NICN1Q9BSH3 213 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 SUCNR1Q9BXA5 334 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 CHMP1AQ9HD42 196 aaPredicted RBP6.46□□□□□ -1.38
VPS39-204ENST00000561818 C1orf123Q9NWV4 160 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 EHFQ9NZC4 300 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 OPN4Q9UHM6 478 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 PCDHB10Q9UN67 800 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 CSAG2Q9Y5P2 127 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 ZNF407Q9C0G0 2248 aa6.46□□□□□ -1.38
VPS39-204ENST00000561818 MED12Q93074 2177 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 CEP250Q9BV73 2442 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 A0A0D9SG52 128 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 NPIPB11E5RHQ5 1161 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 FABP7O15540 132 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 TIMM8AO60220 97 aaPredicted RBP6.45□□□□□ -1.38
VPS39-204ENST00000561818 SSX5O60225 188 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 IFNA21P01568 189 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 ZNF735P0CB33 412 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 ZNF35P13682 527 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 PTAFRP25105 342 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 GLRXP35754 106 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 CFHR2P36980 270 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 NUP62P37198 522 aaPredicted RBP6.45□□□□□ -1.38
VPS39-204ENST00000561818 RBMXP38159 391 aaKnown RBP6.45□□□□□ -1.38
VPS39-204ENST00000561818 WNT5AP41221 380 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms