RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SPACA5Q96QH8 159 aa9.97□□□□□ -0.81
LDLR-212ENST00000560467 MRPL37Q9BZE1 423 aaKnown RBP9.97□□□□□ -0.81
LDLR-212ENST00000560467 WDR12Q9GZL7 423 aaKnown RBP9.97□□□□□ -0.81
LDLR-212ENST00000560467 BPESC1Q9GZL8 116 aa9.97□□□□□ -0.81
LDLR-212ENST00000560467 RHOFQ9HBH0 211 aa9.97□□□□□ -0.81
LDLR-212ENST00000560467 MSL2Q9HCI7 577 aa9.97□□□□□ -0.81
LDLR-212ENST00000560467 DECR2Q9NUI1 292 aa9.97□□□□□ -0.81
LDLR-212ENST00000560467 A0A0G2JK05 382 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 PQLC2LA1A4F0 135 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 A6NLC8 198 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 NDUFS8O00217 210 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 WIPF1O43516 503 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 SPRY3O43610 288 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 CRTAPO75718 401 aaPredicted RBP9.96□□□□□ -0.82
LDLR-212ENST00000560467 PLATP00750 562 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 GTF2F2P13984 249 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 IRF2P14316 349 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 SNRPBP14678 240 aaKnown RBP9.96□□□□□ -0.82
LDLR-212ENST00000560467 ANOS1P23352 680 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 CLDN12P56749 244 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 ZNF45Q02386 682 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 PDZK1IP1Q13113 114 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 LSAMPQ13449 338 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 ZNF846Q147U1 533 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 ARL6IP1Q15041 203 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 SLC22A6Q4U2R8 563 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 ASPHD2Q6ICH7 369 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 RAB12Q6IQ22 244 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 HAGHLQ6PII5 290 aaPredicted RBP9.96□□□□□ -0.82
LDLR-212ENST00000560467 CELF2-AS1Q8N7Q2 184 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 OR51D1Q8NGF3 324 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 OR5D18Q8NGL1 313 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 OR11L1Q8NGX0 322 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 LGALS14Q8TCE9 139 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 FAM46BQ96A09 425 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 RFT1Q96AA3 541 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 ITPKCQ96DU7 683 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 MRPS24Q96EL2 167 aaKnown RBP9.96□□□□□ -0.82
LDLR-212ENST00000560467 VRK1Q99986 396 aaPredicted RBP9.96□□□□□ -0.82
LDLR-212ENST00000560467 PKIBQ9C010 78 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 ATG5Q9H1Y0 275 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 FN3KRPQ9HA64 309 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 GLS2Q9UI32 602 aa9.96□□□□□ -0.82
LDLR-212ENST00000560467 LRRC30A6NM36 301 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 CLDN25C9JDP6 229 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 J3QT63 122 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 CTDSP2O14595 271 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 HPGDSO60760 199 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 HTR3BO95264 441 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 PAHP00439 452 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 CHRM2P08172 466 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 CD37P11049 281 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 RAB6AP20340 208 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 IL2RGP31785 369 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 ALDH3B1P43353 468 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 OR3A4PP47883 348 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 TNFAIP6P98066 277 aaPredicted RBP9.95□□□□□ -0.82
LDLR-212ENST00000560467 EFNB3Q15768 340 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 ALKBH6Q3KRA9 238 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 METAP1DQ6UB28 335 aaPredicted RBP9.95□□□□□ -0.82
LDLR-212ENST00000560467 FAM131AQ6UXB0 335 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 SLC25A26Q70HW3 274 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 LRP11Q86VZ4 500 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 NR2C2APQ86WQ0 139 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 PXT1Q8NFP0 134 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 OR10AD1Q8NGE0 317 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 OR4D6Q8NGJ1 314 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 HPS1Q92902 700 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 ERGIC1Q969X5 290 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 RHBDL2Q9NX52 303 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 OR5V1Q9UGF6 321 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 IL19Q9UHD0 177 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 MGAM2Q2M2H8 2515 aa9.95□□□□□ -0.82
LDLR-212ENST00000560467 A0A0A6YYH2 397 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 hCG_1807616A0A1W2PRN6 198 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 A6NJ64 397 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 TPPPO94811 219 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 NAT2P11245 290 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 CPT2P23786 658 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 PTBP1P26599 531 aaKnown RBP eCLIP9.94□□□□□ -0.82
LDLR-212ENST00000560467 TNFSF8P32971 234 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 CD200P41217 278 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 MNDAP41218 407 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 PITPNBP48739 271 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 MMP15P51511 669 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 IL24Q13007 206 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 DMRTC1Q5HYR2 192 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.94□□□□□ -0.82
LDLR-212ENST00000560467 OR56B1Q8NGI3 324 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 OR51T1Q8NGJ9 327 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 WDFY2Q96P53 400 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 GFI1Q99684 422 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 TMEM59Q9BXS4 323 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 ABCG5Q9H222 651 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 OR51I2Q9H344 312 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 EXTL2Q9UBQ6 330 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 FBLN5Q9UBX5 448 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 MRPS7Q9Y2R9 242 aaKnown RBP9.94□□□□□ -0.82
LDLR-212ENST00000560467 ARFGEF3Q5TH69 2177 aa9.94□□□□□ -0.82
LDLR-212ENST00000560467 YLPM1P49750 1951 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms