RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 DEFB108BQ8NET1 73 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 OR5D18Q8NGL1 313 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 KCNG3Q8TAE7 436 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 Q96MF0 132 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 GAL3ST1Q99999 423 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 BPESC1Q9GZL8 116 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 ZNF665Q9H7R5 613 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 TMEM165Q9HC07 324 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 MTCH1Q9NZJ7 389 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 NLKQ9UBE8 527 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 STEAP1Q9UHE8 339 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 CACNG2Q9Y698 323 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.75□□□□□ -1.171e-6■■■□□ 18
LDLR-210ENST00000559340 DSCAML1Q8TD84 2053 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 ABCA1O95477 2261 aa7.75□□□□□ -1.17
LDLR-210ENST00000559340 CR1P17927 2039 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 IFITM5A6NNB3 132 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 OR2AT4A6NND4 320 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 C3orf80F5H4A9 247 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 AIPO00170 330 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 ARSBP15848 533 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 PRKACAP17612 351 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 BCL3P20749 454 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 CFPP27918 469 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 CD80P33681 288 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 SOX6P35712 828 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 GABRA2P47869 451 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 NPY4RP50391 375 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 SCAND1P57086 179 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 GMFBP60983 142 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 VBP1P61758 197 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 MXD1Q05195 221 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 LOXL1Q08397 574 aaPredicted RBP7.74□□□□□ -1.17
LDLR-210ENST00000559340 IL13RA2Q14627 380 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 ZMYND11Q15326 602 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 C11orf91Q3C1V1 193 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 SLC22A6Q4U2R8 563 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 AVPI1Q5T686 147 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 ATPAF1Q5TC12 328 aaPredicted RBP7.74□□□□□ -1.17
LDLR-210ENST00000559340 SFRP4Q6FHJ7 346 aaPredicted RBP7.74□□□□□ -1.17
LDLR-210ENST00000559340 TGIF2LYQ8IUE0 185 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 OSR2Q8N2R0 312 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 Q8NFD4 153 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 OR8B3Q8NGG8 313 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 OR5D13Q8NGL4 314 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 FAM3DQ96BQ1 224 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 NEIL1Q96FI4 390 aaPredicted RBP7.74□□□□□ -1.17
LDLR-210ENST00000559340 OR8B2Q96RD0 313 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 TMEM246Q9BRR3 403 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 URM1Q9BTM9 101 aaKnown RBP7.74□□□□□ -1.17
LDLR-210ENST00000559340 REG4Q9BYZ8 158 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 PATZ1Q9HBE1 687 aaKnown RBP7.74□□□□□ -1.17
LDLR-210ENST00000559340 HES4Q9HCC6 221 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 HMG20AQ9NP66 347 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 KAAG1Q9UBP8 84 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 ARHGAP32A7KAX9 2087 aa7.74□□□□□ -1.17
LDLR-210ENST00000559340 PDZD2O15018 2839 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 IGHV4-30-2A0A087WSY4 118 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FUOMA2VDF0 154 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 METTL21EPA6NDL7 271 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A10PA6NDY2 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A18PA6NE21 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A16PA6NEW6 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A20PA6NIJ5 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A8PA6NJQ4 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A7PA6NKC0 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 RFPL4AA6NLU0 287 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A22PA8MWA6 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A12PA8MX19 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A5PA8MXJ8 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A23PA8MXZ1 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 RFPL4AL1F8VTS6 287 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 ZNF701M0R085 212 aaPredicted RBP7.73□□□□□ -1.17
LDLR-210ENST00000559340 WNT9BO14905 357 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 DEGS1O15121 323 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 GPR37O15354 613 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 ADAM20O43506 726 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 NDUFB3O43676 98 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 CRTAPO75718 401 aaPredicted RBP7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A15PP0C7V4 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A13PP0C7W8 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A14PP0C7W9 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM90A24PP0C7X0 464 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 CALCBP10092 127 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 PSG2P11465 335 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 RPS2P15880 293 aaKnown RBP7.73□□□□□ -1.17
LDLR-210ENST00000559340 EGR1P18146 543 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 SERPINA2P20848 420 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 PRDX2P32119 198 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 NPBWR2P48146 333 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 RORCP51449 518 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 IL13RA1P78552 427 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 ZNF146Q15072 292 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 CTF1Q16619 201 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 MPV17LQ2QL34 196 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 C2orf76Q3KRA6 126 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 ESCO2Q56NI9 601 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 LRRC10Q5BKY1 277 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 NHLRC3Q5JS37 347 aa7.73□□□□□ -1.17
LDLR-210ENST00000559340 FAM201AQ5SY85 155 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms