RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 FAM24AA6NFZ4 105 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 J3QRE1 110 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 ZFAND5O76080 213 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 SYNGR4O95473 234 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 IGHV3-9P01782 118 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 CT45A8P0DMV1 189 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 CT45A9P0DMV2 189 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 MYF5P13349 255 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 SELENOVP59797 346 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 UBE2G1P62253 170 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 TMEM267Q0VDI3 215 aaPredicted RBP6.31□□□□□ -1.4
USP3-210ENST00000559192 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.31□□□□□ -1.4
USP3-210ENST00000559192 CT45A2Q5DJT8 189 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 FAHD2BQ6P2I3 314 aaPredicted RBP6.31□□□□□ -1.4
USP3-210ENST00000559192 C8orf44Q96CB5 159 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 FAHD2AQ96GK7 314 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 OR6C1Q96RD1 312 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 REG4Q9BYZ8 158 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 ANKRD10Q9NXR5 420 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 OR14J1Q9UGF5 321 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 A0A1B0GV90 55 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 SERTM2A0A1B0GWG4 89 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 CDRT15L2A8MXV6 281 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 B4E171 279 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 IL11P20809 199 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 COL9A1P20849 921 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 ZBTB25P24278 435 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 CAPZBP47756 277 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 GABRA4P48169 554 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 NOVA1P51513 510 aaKnown RBP6.31□□□□□ -1.4
USP3-210ENST00000559192 NHLH1Q02575 133 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 NHLH2Q02577 135 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 KISS1Q15726 138 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 DRAM2Q6UX65 266 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 WDR5BQ86VZ2 330 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 ARHGEF39Q8N4T4 335 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 ZNF738Q8NE65 137 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 CMTM2Q8TAZ6 248 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 MRPL24Q96A35 216 aaKnown RBP6.31□□□□□ -1.4
USP3-210ENST00000559192 SLC25A28Q96A46 364 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 ADAT3Q96EY9 351 aaPredicted RBP6.31□□□□□ -1.4
USP3-210ENST00000559192 RHOVQ96L33 236 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 MSL2Q9HCI7 577 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 CLDN34H7C241 214 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 SCRG1O75711 98 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 RPS4Y1P22090 263 aaKnown RBP6.31□□□□□ -1.4
USP3-210ENST00000559192 SMAD4Q13485 552 aaKnown RBP6.31□□□□□ -1.4
USP3-210ENST00000559192 LANCL3Q6ZV70 420 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 ZNF100Q8IYN0 542 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 RBMXL3Q8N7X1 1067 aaKnown RBP6.31□□□□□ -1.4
USP3-210ENST00000559192 BHLHE23Q8NDY6 225 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 PECRQ9BY49 303 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 ALX4Q9H161 411 aaPredicted RBP6.31□□□□□ -1.4
USP3-210ENST00000559192 HS3ST3A1Q9Y663 406 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 LOC102725191A0A1B0GVB3 256 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 A0A1B0GX78 115 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 HELTA6NFD8 242 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 M0R135 149 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 MFNGO00587 321 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 PTGER4P35408 488 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 GNG10P50151 68 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 TMEM97Q5BJF2 176 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 RNASEKQ6P5S7 137 aaKnown RBP6.31□□□□□ -1.4
USP3-210ENST00000559192 ZNF799Q96GE5 643 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 GFI1Q99684 422 aa6.31□□□□□ -1.4
USP3-210ENST00000559192 C5orf52A6NGY3 159 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 H0YIG0 161 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 SOX15O60248 233 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 BGLAPP02818 100 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 DTYMKP23919 212 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 S100A7P31151 101 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 CSNK1EP49674 416 aaKnown RBP6.3□□□□□ -1.4
USP3-210ENST00000559192 PLP1P60201 277 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 LEMD1Q68G75 181 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 STUMQ69YW2 141 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 S100A7AQ86SG5 101 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 IL22RA1Q8N6P7 574 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 DMBX1Q8NFW5 382 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 OR8B12Q8NGG6 310 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 ASB10Q8WXI3 467 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 RPP25Q9BUL9 199 aaKnown RBP6.3□□□□□ -1.4
USP3-210ENST00000559192 FGF21Q9NSA1 209 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 DNAJB11Q9UBS4 358 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 KCNK7Q9Y2U2 307 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 PTRH2Q9Y3E5 179 aaKnown RBP6.3□□□□□ -1.4
USP3-210ENST00000559192 LIPGQ9Y5X9 500 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 TRBV5-7A0A0A0MS05 114 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 LINC01565O15544 149 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 LPAR6P43657 344 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 AMTP48728 403 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 CD81P60033 236 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 CATR1Q13166 79 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 HFEQ30201 348 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 OBP2AQ9NY56 170 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 FKBP11Q9NYL4 201 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 OR6C3Q9NZP0 311 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 LHX6Q9UPM6 363 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 PPP1R3CQ9UQK1 317 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 LOC101059948A0A1B0GTJ6 334 aa6.3□□□□□ -1.4
USP3-210ENST00000559192 ANKRD30BLA7E2S9 258 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms