RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 FAM86C1Q9NVL1 165 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 OSGIN2Q9Y236 505 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 RELNP78509 3460 aa9.17□□□□□ -0.94
CUX1-217ENST00000558836 CRYZL1O95825 349 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 RPA2P15927 270 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 LUMP51884 338 aaPredicted RBP9.16□□□□□ -0.94
CUX1-217ENST00000558836 FUT6P51993 359 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 BPIFB3P59826 476 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 OR8B8Q15620 311 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 TSC22D1Q15714 1073 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 FAM189A2Q15884 450 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 LHFPL2Q6ZUX7 228 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 LHFPL1Q86WI0 220 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 METTL8Q9H825 291 aaKnown RBP9.16□□□□□ -0.94
CUX1-217ENST00000558836 KIAA2026Q5HYC2 2103 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 ANKRD11Q6UB99 2663 aaPredicted RBP9.16□□□□□ -0.94
CUX1-217ENST00000558836 CEP295Q9C0D2 2601 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 BSNQ9UPA5 3926 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 TRGV5A0A0B4J1U4 118 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 OR6C65A6NJZ3 312 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 NMBP08949 121 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 CBX5P45973 191 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 TAS2R46P59540 309 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 SP6Q3SY56 376 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 BOLLQ8N9W6 283 aaKnown RBP9.16□□□□□ -0.94
CUX1-217ENST00000558836 ZFP62Q8NB50 900 aaPredicted RBP9.16□□□□□ -0.94
CUX1-217ENST00000558836 CCDC120Q96HB5 630 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 OR10C1Q96KK4 312 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 ZNF488Q96MN9 340 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 BCO1Q9HAY6 547 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 ANXA10Q9UJ72 324 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 KMT2EQ8IZD2 1858 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 CADP27708 2225 aa9.16□□□□□ -0.94
CUX1-217ENST00000558836 CACNA1DQ01668 2161 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 RNF222A6NCQ9 220 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 DBX1A6NMT0 343 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 IL18BPO95998 194 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 OR5H8P0DN80 308 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 BCL3P20749 454 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 CHATP28329 748 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 SOX8P57073 446 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 PRDX4Q13162 271 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 Q6ZPA2 131 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 MRPL21Q7Z2W9 205 aaKnown RBP9.15□□□□□ -0.94
CUX1-217ENST00000558836 SPERTQ8NA61 448 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 THAP6Q8TBB0 222 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 WDYHV1Q96HA8 205 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 ZNF471Q9BX82 626 aaPredicted RBP9.15□□□□□ -0.94
CUX1-217ENST00000558836 FAM117AQ9C073 453 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 ZNF442Q9H7R0 627 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 CHMP1AQ9HD42 196 aaPredicted RBP9.15□□□□□ -0.94
CUX1-217ENST00000558836 TNFSF18Q9UNG2 199 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 GTF3C1Q12789 2109 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 ADGRG4Q8IZF6 3080 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 LGALS8O00214 317 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 XRCC2O43543 280 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 SFT2D2O95562 160 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 PDGFAP04085 211 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 RRASP10301 218 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 FPR2P25090 351 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 DAZAP2Q15038 168 aaPredicted RBP9.15□□□□□ -0.94
CUX1-217ENST00000558836 AANATQ16613 207 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 ACTBL2Q562R1 376 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 MYPOPQ86VE0 399 aaPredicted RBP9.15□□□□□ -0.94
CUX1-217ENST00000558836 ARL6IP6Q8N6S5 226 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.15□□□□□ -0.94
CUX1-217ENST00000558836 OR5M9Q8NGP3 310 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 HPSE2Q8WWQ2 592 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 REPIN1Q9BWE0 567 aaKnown RBP9.15□□□□□ -0.94
CUX1-217ENST00000558836 LINC00470Q9BZP3 86 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 PRDM14Q9GZV8 571 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 RGCCQ9H4X1 137 aa9.15□□□□□ -0.94
CUX1-217ENST00000558836 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.15□□□□□ -0.94
CUX1-217ENST00000558836 INTS1Q8N201 2190 aaKnown RBP9.15□□□□□ -0.94
CUX1-217ENST00000558836 ACACAQ13085 2346 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 SLC22A20A6NK97 555 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 H0YIZ8 118 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 GALR2O43603 387 aaPredicted RBP9.15□□□□□ -0.95
CUX1-217ENST00000558836 FCGR3AP08637 254 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 CELA3BP08861 270 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 PTGER4P35408 488 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 RBMXP38159 391 aaKnown RBP9.15□□□□□ -0.95
CUX1-217ENST00000558836 FGL1Q08830 312 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 CLN3Q13286 438 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 FAHD2BQ6P2I3 314 aaPredicted RBP9.15□□□□□ -0.95
CUX1-217ENST00000558836 SLC22A25Q6T423 547 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 SLC38A6Q8IZM9 456 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 TMEM185AQ8NFB2 350 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 OR6K3Q8NGY3 331 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 DCUN1D4Q92564 292 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 RRNAD1Q96FB5 475 aaKnown RBP9.15□□□□□ -0.95
CUX1-217ENST00000558836 FAHD2AQ96GK7 314 aa9.15□□□□□ -0.95
CUX1-217ENST00000558836 CUL9Q8IWT3 2517 aa9.14□□□□□ -0.95
CUX1-217ENST00000558836 ZNF732B4DXR9 585 aa9.14□□□□□ -0.95
CUX1-217ENST00000558836 CRHP06850 196 aa9.14□□□□□ -0.95
CUX1-217ENST00000558836 RPS2P15880 293 aaKnown RBP9.14□□□□□ -0.95
CUX1-217ENST00000558836 PSMB6P28072 239 aa9.14□□□□□ -0.95
CUX1-217ENST00000558836 TNFSF10P50591 281 aa9.14□□□□□ -0.95
CUX1-217ENST00000558836 TAS2R31P59538 309 aa9.14□□□□□ -0.95
CUX1-217ENST00000558836 PHLDA2Q53GA4 152 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms