RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 CDH26Q8IXH8 852 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 LRRC18Q8N456 261 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 FTMTQ8N4E7 242 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 CNEP1R1Q8N9A8 125 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 ST6GALNAC3Q8NDV1 305 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 TMEM185AQ8NFB2 350 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 STEAP2Q8NFT2 490 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 OR56B1Q8NGI3 324 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 OR52M1Q8NGK5 317 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 OR5D14Q8NGL3 314 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 OR1K1Q8NGR3 316 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 C15orf40Q8WUR7 153 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 TSEN15Q8WW01 171 aaKnown RBP4.4□□□□□ -1.71
LDLR-209ENST00000558528 RND1Q92730 232 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 TMEM203Q969S6 136 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 NABP1Q96AH0 204 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 PGLYRP3Q96LB9 341 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 CEP19Q96LK0 163 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 C4orf45Q96LM5 186 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 TECTBQ96PL2 329 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 ALKBH3Q96Q83 286 aaPredicted RBP4.4□□□□□ -1.71
LDLR-209ENST00000558528 PBOV1Q9GZY1 135 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 DPAGT1Q9H3H5 408 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 GPR173Q9NS66 373 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 ABRACLQ9P1F3 81 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 NUFIP1Q9UHK0 495 aaKnown RBP4.4□□□□□ -1.71
LDLR-209ENST00000558528 CLEC4AQ9UMR7 237 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 SLC22A13Q9Y226 551 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 AMDHD2Q9Y303 409 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 LHFPL6Q9Y693 200 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 COL6A5A8TX70 2615 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 PRRC2CQ9Y520 2896 aaKnown RBP4.39□□□□□ -1.71
LDLR-209ENST00000558528 A0A0B4J203 849 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 TRBV5-5A0A0J9YX44 114 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 A0A1B0GUH1 482 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 GAGE12JA6NER3 117 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 E9PI62 339 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 F5H5K5 113 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 K7EM74 188 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 M0R135 149 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 RER1O15258 196 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 LRRTM2O43300 516 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 SYT7O43581 403 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 SLC19A2O60779 497 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 SC5DO75845 299 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 LALBAP00709 142 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 IGHV2-70P01814 119 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 ADRA2AP08913 450 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 OCMP0CE72 109 aaPredicted RBP4.39□□□□□ -1.71
LDLR-209ENST00000558528 CD79AP11912 226 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 CBR1P16152 277 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 ZNF32P17041 273 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 KLK2P20151 261 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 IL32P24001 234 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 OTX1P32242 354 aaPredicted RBP4.39□□□□□ -1.71
LDLR-209ENST00000558528 TNFSF8P32971 234 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 SDC2P34741 201 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 DDOSTP39656 456 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 HTR5AP47898 357 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 CX3CR1P49238 355 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 PRKXP51817 358 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 TDGF1P3P51864 188 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 NCS1P62166 190 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 RPS25P62851 125 aaKnown RBP4.39□□□□□ -1.71
LDLR-209ENST00000558528 PSG4Q00888 419 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 ZNF45Q02386 682 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 UBE2V1Q13404 147 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 C3AR1Q16581 482 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 GSG1Q2KHT4 349 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 TBC1D28Q2M2D7 210 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 AWAT1Q58HT5 328 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 WDR38Q5JTN6 314 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 TIMM23BQ5SRD1 257 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 PHYHD1Q5SRE7 291 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 CORO6Q6QEF8 472 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 TMEM91Q6ZNR0 172 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 FAM57BQ71RH2 274 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 MRGPRGQ86SM5 289 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 ZNF573Q86YE8 665 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 DOLPP1Q86YN1 238 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 SKA3Q8IX90 412 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 ZFP41Q8N8Y5 198 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 C9orf106Q8NAJ2 232 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 MCFD2Q8NI22 146 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 THAP6Q8TBB0 222 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 DYNC2LI1Q8TCX1 351 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 ASB5Q8WWX0 329 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 ERGIC1Q969X5 290 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 SLC25A46Q96AG3 418 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 MUCL1Q96DR8 90 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 FBXO17Q96EF6 278 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 ZNF799Q96GE5 643 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 FOXN4Q96NZ1 517 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 PDCD1LG2Q9BQ51 273 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 DCUN1D5Q9BTE7 237 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 OR2H1Q9GZK4 316 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 NAA50Q9GZZ1 169 aaKnown RBP4.39□□□□□ -1.71
LDLR-209ENST00000558528 HMG20AQ9NP66 347 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 ABCB9Q9NP78 766 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 ASF1BQ9NVP2 202 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms