RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 Q8WTZ3 238 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 LIPHQ8WWY8 451 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 NSG2Q9Y328 171 aa9.94□□□□□ -0.82
LDLR-208ENST00000558518 C3orf80F5H4A9 247 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 SSX2Q16385 188 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 C21orf62-AS1Q17RA5 79 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 GNRHR2Q96P88 292 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 KCNK17Q96T54 332 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 NIPSNAP3BQ9BS92 247 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 ATG101Q9BSB4 218 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 LRFN1Q9P244 771 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 GAB2Q9UQC2 676 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 OSGIN2Q9Y236 505 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 DNAJC13O75165 2243 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 ZNF814B7Z6K7 855 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 LCATP04180 440 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 ISG15P05161 165 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 MMP7P09237 267 aaPredicted RBP9.93□□□□□ -0.82
LDLR-208ENST00000558518 GABRG2P18507 467 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 BMP5P22003 454 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 ALDH3B1P43353 468 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 HMGN3Q15651 99 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 UBE2V2Q15819 145 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 VAX1Q5SQQ9 334 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 C9orf135Q5VTT2 229 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 WDR25Q64LD2 544 aaPredicted RBP9.93□□□□□ -0.82
LDLR-208ENST00000558518 ZNF695Q8IW36 515 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 OR5C1Q8NGR4 320 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 NAT6Q93015 286 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 ICE1Q9Y2F5 2266 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 IGHV3-64DA0A0J9YX35 117 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 TRBV11-1A0A0K0K1C0 115 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 ZNF587BE7ETH6 402 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 IGHV3-9P01782 118 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 ATP6V0CP27449 155 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 PLA2G5P39877 138 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 MPV17LQ2QL34 196 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 NUP210LQ5VU65 1888 aa9.93□□□□□ -0.82
LDLR-208ENST00000558518 DMRTC2Q8IXT2 367 aaPredicted RBP9.93□□□□□ -0.82
LDLR-208ENST00000558518 LOC390937A0A1W2PQ73 354 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 BTBD17A6NE02 478 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 RBFOX3A6NFN3 312 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 FIGNL2A6NMB9 653 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 TNFRSF10CO14798 259 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 SLC34A2O95436 690 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 CAPZBP47756 277 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 ERVFRD-1P60508 538 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 RND3P61587 244 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 LIME1Q9H400 295 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 ZNF107Q9UII5 783 aaPredicted RBP9.92□□□□□ -0.82
LDLR-208ENST00000558518 HS3ST3B1Q9Y662 390 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 WSB1Q9Y6I7 421 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 NBEAQ8NFP9 2946 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 SPTY2D1-AS1A0A0U1RR47 76 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 NKX2-6A6NCS4 301 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 HSD17B6O14756 317 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 SRSF10O75494 262 aaKnown RBP9.92□□□□□ -0.82
LDLR-208ENST00000558518 GNRH1P01148 92 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 SOD3P08294 240 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 DANCRP0C864 163 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 PGA4P0DJD7 388 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 PGA5P0DJD9 388 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 PLPP5Q8NEB5 264 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 PTX4Q96A99 478 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 F10P00742 488 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 SNRPCP09234 159 aaKnown RBP9.92□□□□□ -0.82
LDLR-208ENST00000558518 TESK1Q15569 626 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 KHDC3LQ587J8 217 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 CXorf66Q5JRM2 361 aaPredicted RBP9.92□□□□□ -0.82
LDLR-208ENST00000558518 THNSL2Q86YJ6 484 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 LGI3Q8N145 548 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 SLC35G3Q8N808 338 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 OR1L3Q8NH93 324 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 P4HTMQ9NXG6 502 aa9.92□□□□□ -0.82
LDLR-208ENST00000558518 RBM7Q9Y580 266 aaKnown RBP9.92□□□□□ -0.82
LDLR-208ENST00000558518 TSTD3H0UI37 97 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 ELLP55199 621 aaPredicted RBP9.91□□□□□ -0.82
LDLR-208ENST00000558518 CASP6P55212 293 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 HSD11B2P80365 405 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 ZNF154Q13106 437 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 CMTM1Q8IZ96 169 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 FBXL14Q8N1E6 418 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 OR10G3Q8NGC4 313 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 PIGCQ92535 297 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 SHDQ96IW2 340 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 CCNL2Q96S94 520 aaPredicted RBP9.91□□□□□ -0.82
LDLR-208ENST00000558518 RNF122Q9H9V4 155 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 SEBOXQ9HB31 216 aaPredicted RBP9.91□□□□□ -0.82
LDLR-208ENST00000558518 SLC2A9Q9NRM0 540 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 ANXA10Q9UJ72 324 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 CCDC187A0A096LP49 1063 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 SMCO3A2RU48 225 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 ZNF729A6NN14 1252 aaPredicted RBP9.91□□□□□ -0.82
LDLR-208ENST00000558518 MASP2O00187 686 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 CNOT4O95628 575 aaKnown RBP9.91□□□□□ -0.82
LDLR-208ENST00000558518 RPS2P15880 293 aaKnown RBP9.91□□□□□ -0.82
LDLR-208ENST00000558518 APOBEC1P41238 236 aaKnown RBP9.91□□□□□ -0.82
LDLR-208ENST00000558518 CSNK1EP49674 416 aaKnown RBP9.91□□□□□ -0.82
LDLR-208ENST00000558518 BLKP51451 505 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 RNF4P78317 190 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms