RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 CEACAM19Q7Z692 300 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 Q8IYB0 196 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 SPARTQ8N0X7 666 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 FAM58AQ8N1B3 248 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 FGFRL1Q8N441 504 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 CD177Q8N6Q3 437 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 TNFAIP8L1Q8WVP5 186 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 RAB40AQ8WXH6 277 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 H1FXQ92522 213 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 GAFA1Q96PS6 74 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 NKX3-1Q99801 234 aaPredicted RBP9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 NUDT16L1Q9BRJ7 211 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 MRI1Q9BV20 369 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 DNTTIP1Q9H147 329 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 ISYNA1Q9NPH2 558 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 NOX4Q9NPH5 578 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 RBFOX1Q9NWB1 397 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 TMEM160Q9NX00 188 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 SLC25A10Q9UBX3 287 aaPredicted RBP9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 LPAR3Q9UBY5 353 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 LRRC42Q9Y546 428 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 INSIG2Q9Y5U4 225 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 TLN2Q9Y4G6 2542 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 ZNF469Q96JG9 3925 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 TRAV8-7A0A075B6U6 113 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 TRBV5-7A0A0A0MS05 114 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 PPIAL4CA0A0B4J2A2 164 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 IGHV2-70DA0A0C4DH43 119 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 C22orf46C9J442 243 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 J3QLI3 93 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 GABRPO00591 440 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 SIGLEC5O15389 551 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 PIN1P1O15428 100 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 ENSAO43768 121 aaKnown RBP9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 KNG1P01042 644 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 ALDOBP05062 364 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 CPEP16870 476 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 IGFBP3P17936 291 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 ZNF93P35789 620 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 ERVK11-1P61568 191 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 RPS25P62851 125 aaKnown RBP9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 TPBGQ13641 420 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 ARMCX4Q5H9R4 360 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 ZNF529Q6P280 563 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 BTN2A1Q7KYR7 527 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 JAGN1Q8N5M9 183 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 PNLDC1Q8NA58 520 aaKnown RBP9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 ZNRF1Q8ND25 227 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 S100A13Q99584 98 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 HES4Q9HCC6 221 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 TCF7L1Q9HCS4 588 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 GLS2Q9UI32 602 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 METRNQ9UJH8 293 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 ZNF222Q9UK12 451 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 ING4Q9UNL4 249 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 FOXJ3Q9UPW0 622 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 POLR3KQ9Y2Y1 108 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 MAB21L2Q9Y586 359 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 DOCK11Q5JSL3 2073 aa9.51□□□□□ -0.89
CCDC88C-212ENST00000556767 CELSR1Q9NYQ6 3014 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 IGKV1-12A0A0C4DH73 117 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 KIR2DS1A0A191URI9 304 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 MAGEA13PA6NCF6 341 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 GPX5O75715 221 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 KDM4BO94953 1096 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 ECDO95905 644 aaPredicted RBP9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 IGKV1D-12P01611 117 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 SFTPBP07988 381 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 SRD5A1P18405 259 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 ADRA2CP18825 462 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 FSTP19883 344 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 PSMB9P28065 219 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 DUSP1P28562 367 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 OR3A4PP47883 348 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 ZP1P60852 638 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 COL10A1Q03692 680 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 SCN1BQ07699 218 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 RSU1Q15404 277 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 TRAM1Q15629 374 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 HSD17B12Q53GQ0 312 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 FAM27D1Q5T7N8 215 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 ZNF773Q6PK81 442 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 PHC2Q8IXK0 858 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 SAXO1Q8IYX7 474 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 ZNF561Q8N587 486 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 TEX29Q8N6K0 151 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 ASCC1Q8N9N2 400 aaKnown RBP9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 ZSCAN4Q8NAM6 433 aaPredicted RBP9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 SDSLQ96GA7 329 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 TMPRSS13Q9BYE2 586 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 IL36RNQ9UBH0 155 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 GSTK1Q9Y2Q3 226 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 AUP1Q9Y679 476 aa9.5□□□□□ -0.89
CCDC88C-212ENST00000556767 A0A1W2PQ09 198 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 GPR37O15354 613 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 FCN3O75636 299 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 RGS9O75916 674 aaPredicted RBP9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 CDRT1O95170 752 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 HTR3BO95264 441 aa9.49□□□□□ -0.89
CCDC88C-212ENST00000556767 HAND1O96004 215 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms