RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 NLE1Q9NVX2 485 aaPredicted RBP2.19□□□□□ -2.06
SCFD1-221ENST00000556534 C15orf41Q9Y2V0 281 aa2.19□□□□□ -2.06
SCFD1-221ENST00000556534 SNX24Q9Y343 169 aa2.19□□□□□ -2.06
SCFD1-221ENST00000556534 LRRC42Q9Y546 428 aa2.19□□□□□ -2.06
SCFD1-221ENST00000556534 MUC19Q7Z5P9 8384 aa2.19□□□□□ -2.06
SCFD1-221ENST00000556534 A0A1B0GX12 115 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 CLDN34H7C241 214 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 LGALS9O00182 355 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 UPK1AO00322 258 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 CALUO43852 315 aaPredicted RBP2.18□□□□□ -2.06
SCFD1-221ENST00000556534 EIF1BO60739 113 aaKnown RBP2.18□□□□□ -2.06
SCFD1-221ENST00000556534 DHRS3O75911 302 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 CDK14O94921 469 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 TNFAIP8O95379 198 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 YEATS4O95619 227 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 IGKV5-2P06315 115 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 RD3LP0DJH9 198 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 ME2P23368 584 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 PSMB5P28074 263 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 UGT2B10P36537 528 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 EIF1P41567 113 aaKnown RBP2.18□□□□□ -2.06
SCFD1-221ENST00000556534 CRATP43155 626 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 XKP51811 444 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 CMC4P56277 68 aaPredicted RBP2.18□□□□□ -2.06
SCFD1-221ENST00000556534 RAB38P57729 211 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 CD164Q04900 197 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 PRKCDQ05655 676 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 TRDNQ13061 729 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 SYCP1Q15431 976 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 TRAM1Q15629 374 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 TEX30Q5JUR7 227 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 AP1ARQ63HQ0 302 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 GUSBP11Q6P575 273 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 SPATA24Q86W54 205 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 LRRC6Q86X45 466 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 CALHM3Q86XJ0 350 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 OR8G5Q8NG78 346 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 OR51Q1Q8NH59 317 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 UBA3Q8TBC4 463 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 RORBQ92753 470 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 SNF8Q96H20 258 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 CDX2Q99626 313 aaPredicted RBP2.18□□□□□ -2.06
SCFD1-221ENST00000556534 UPF3BQ9BZI7 483 aaKnown RBP2.18□□□□□ -2.06
SCFD1-221ENST00000556534 NDEL1Q9GZM8 345 aa2.18□□□□□ -2.06
SCFD1-221ENST00000556534 NXF2Q9GZY0 626 aaKnown RBP2.18□□□□□ -2.06
SCFD1-221ENST00000556534 EXOSC4Q9NPD3 245 aaKnown RBP2.18□□□□□ -2.06
SCFD1-221ENST00000556534 LRPPRCP42704 1394 aaKnown RBP2.18□□□□□ -2.06
SCFD1-221ENST00000556534 BAZ2AQ9UIF9 1905 aaKnown RBP2.18□□□□□ -2.06
SCFD1-221ENST00000556534 IGKV1-6A0A0C4DH72 117 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 ISPDA4D126 451 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 TOR1AO14656 332 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 IGKV1-39P01597 117 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 HLA-DQB1P01920 261 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 IGKV1D-39P04432 117 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 HLA-GP17693 338 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 GTF2H1P32780 548 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 TUFMP49411 452 aaKnown RBP2.17□□□□□ -2.06
SCFD1-221ENST00000556534 MAP3K7CLP57077 242 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 GRB2P62993 217 aaKnown RBP2.17□□□□□ -2.06
SCFD1-221ENST00000556534 SKP1P63208 163 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 ELF3P78545 371 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-221ENST00000556534 LAMTOR4Q0VGL1 99 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 PMVKQ15126 192 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 OR10J3Q5JRS4 329 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 HBMQ6B0K9 141 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 CLEC19AQ6UXS0 136 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 PRNTQ86SH4 94 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 BBS7Q8IWZ6 715 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 CCNYL1Q8N7R7 359 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 ZNF738Q8NE65 137 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 OR5T1Q8NG75 326 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 OR4M2Q8NGB6 313 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 SFXN5Q8TD22 340 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 TNFRSF14Q92956 283 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 CPNE4Q96A23 557 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-221ENST00000556534 ZMYND19Q96E35 227 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-221ENST00000556534 MRPL48Q96GC5 212 aaKnown RBP2.17□□□□□ -2.06
SCFD1-221ENST00000556534 ZNF514Q96K75 400 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-221ENST00000556534 ANGPTL4Q9BY76 406 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 WDR55Q9H6Y2 383 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-221ENST00000556534 PRO0628Q9UI54 55 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 USH1CQ9Y6N9 552 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 ENPP4Q9Y6X5 453 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 PLXNB3Q9ULL4 1909 aa2.17□□□□□ -2.06
SCFD1-221ENST00000556534 USP42Q9H9J4 1324 aaKnown RBP2.17□□□□□ -2.06
SCFD1-221ENST00000556534 SHANK1Q9Y566 2161 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 SRCAPQ6ZRS2 3230 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 KIAA0232Q92628 1395 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 SVILO95425 2214 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 CENPVL3A0A0U1RRI6 287 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 A0A1B0GXF2 115 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 GOLGA8RI6L899 631 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 SULT1C2O00338 296 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 PLIN3O60664 434 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 RLN2P04090 185 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 IGKV4-1P06312 121 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 TAC1P20366 129 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 M6PRP20645 277 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 KDELR2P33947 212 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 PRSS3P35030 304 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms