RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 R4GN34 69 aa1.34□□□□□ -2.19
SCFD1-218ENST00000556256 SEC16AO15027 2179 aa1.34□□□□□ -2.2
SCFD1-218ENST00000556256 SHANK1Q9Y566 2161 aa1.34□□□□□ -2.2
SCFD1-218ENST00000556256 SHROOM3Q8TF72 1996 aa1.34□□□□□ -2.2
SCFD1-218ENST00000556256 IGKV2-24A0A0C4DH68 120 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 SLC5A10A0PJK1 596 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 GMNCA6NCL1 334 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 OR2AT4A6NND4 320 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 C9JQL5 133 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 K7EPK0 472 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 RNF113AO15541 343 aaKnown RBP1.33□□□□□ -2.2
SCFD1-218ENST00000556256 OR2A4O95047 310 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 NRASP01111 189 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 HRASP01112 189 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 KRASP01116 189 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 ZNF35P13682 527 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 LGALS3P17931 250 aaKnown RBP1.33□□□□□ -2.2
SCFD1-218ENST00000556256 PTNP21246 168 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 HLA-DMAP28067 261 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 SLC6A1P30531 599 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 HTR2BP41595 481 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 GPR4P46093 362 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 TUFMP49411 452 aaKnown RBP1.33□□□□□ -2.2
SCFD1-218ENST00000556256 SLC18A1P54219 525 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 ELOCQ15369 112 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 TAF9Q16594 264 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 CLEC12AQ5QGZ9 265 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 IDNKQ5T6J7 187 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 THOC7Q6I9Y2 204 aaKnown RBP1.33□□□□□ -2.2
SCFD1-218ENST00000556256 CYP4Z2PQ8N1L4 340 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 ZDHHC22Q8N966 263 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 OR5H2Q8NGV7 314 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 OR6N2Q8NGY6 317 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 OR8K3Q8NH51 312 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 SMIM8Q96KF7 97 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 OR2A7Q96R45 310 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 METTL26Q96S19 204 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 UTP23Q9BRU9 249 aaKnown RBP1.33□□□□□ -2.2
SCFD1-218ENST00000556256 PORCNQ9H237 461 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 SLC38A1Q9H2H9 487 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 WDR55Q9H6Y2 383 aaPredicted RBP1.33□□□□□ -2.2
SCFD1-218ENST00000556256 VSIRQ9H7M9 311 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 ACOT13Q9NPJ3 140 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 PARP11Q9NR21 331 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 TAS2R1Q9NYW7 299 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 VAPAQ9P0L0 249 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 ANXA10Q9UJ72 324 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 ZNF391Q9UJN7 358 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 RAB23Q9ULC3 237 aa1.33□□□□□ -2.2
SCFD1-218ENST00000556256 BZW2Q9Y6E2 419 aaKnown RBP1.33□□□□□ -2.2
SCFD1-218ENST00000556256 TICRRQ7Z2Z1 1910 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 IGKV1OR2-108A0A075B7D4 117 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 IGLL5B9A064 214 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 E7EWF7 191 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 FFAR1O14842 300 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 TCAPO15273 167 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 ZMPSTE24O75844 475 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 SC5DO75845 299 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 DHRS3O75911 302 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 CXorf1O96002 111 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 ARR3P36575 388 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 XIAPP98170 497 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 BAMBIQ13145 260 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 VAMP3Q15836 100 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 KRTAP6-3Q3LI67 103 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 Q499Y3 187 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 ACTL10Q5JWF8 245 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 FAHD1Q6P587 224 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 BRD3OSQ6XYD6 125 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 CCNYL1Q8N7R7 359 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 OR8A1Q8NGG7 326 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 LGALS14Q8TCE9 139 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 ZNF75CPQ92670 426 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-218ENST00000556256 ADTRPQ96IZ2 230 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 PPP1R36Q96LQ0 422 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 QKIQ96PU8 341 aaKnown RBP eCLIP1.32□□□□□ -2.23e-7■■■■■ 29.3
SCFD1-218ENST00000556256 THTPAQ9BU02 230 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 TSGA10Q9BZW7 698 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 OR2S2Q9NQN1 319 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 INIPQ9NRY2 104 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 RBM22Q9NW64 420 aaKnown RBP eCLIP1.32□□□□□ -2.2
SCFD1-218ENST00000556256 RMND1Q9NWS8 449 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 INSIG2Q9Y5U4 225 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 LTBP4Q8N2S1 1624 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 SVILO95425 2214 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 C2orf16Q68DN1 1984 aa1.32□□□□□ -2.2
SCFD1-218ENST00000556256 IGKV3D-11A0A0A0MRZ8 115 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 LOC389332A0A1B0GUA5 103 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 A0A1B0GXF2 115 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 GYG2O15488 501 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 SLC37A4O43826 429 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 IGLV6-57P01721 117 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 TAC1P20366 129 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 GUSBP1Q15486 140 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 TNXAQ16473 311 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 SPIN3Q5JUX0 258 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 LDLRAD2Q5SZI1 272 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 C6orf183Q5T699 404 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 ZNF470Q6ECI4 717 aa1.31□□□□□ -2.2
SCFD1-218ENST00000556256 TMEM144Q7Z5S9 345 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms