RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SCGB2A2Q13296 93 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 IL18R1Q13478 541 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 GPR157Q5UAW9 335 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 EGFL6Q8IUX8 553 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 ZNF485Q8NCK3 441 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 BPIFB6Q8NFQ5 453 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 C8orf46Q8TAG6 207 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 GATAD2BQ8WXI9 593 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 C10orf35Q96D05 121 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 TMEM80Q96HE8 168 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 PSORS1C1Q9UIG5 152 aa9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 CAB39Q9Y376 341 aaPredicted RBP9.52□□□□□ -0.89
CCDC88C-208ENST00000554165 IGHV1-69DA0A0B4J2H0 117 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 A0A1W2PQ09 198 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 TMEM82A0PJX8 343 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 IGHV1-69P01742 117 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 PIPP12273 146 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 PRKACBP22694 351 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 C21orf33P30042 268 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 RBP2P50120 134 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 ATP1B3P54709 279 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 COL10A1Q03692 680 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 PDZK1IP1Q13113 114 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 BAMBIQ13145 260 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 CDK5R1Q15078 307 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 CNN3Q15417 329 aaKnown RBP9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 C9orf139Q6ZV77 190 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 AHSA2Q719I0 299 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 FAM185AQ8N0U4 392 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 DNAAF1Q8NEP3 725 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 OR51A2Q8NGJ7 313 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 RPS4Y2Q8TD47 263 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 TSEN15Q8WW01 171 aaKnown RBP9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 OPALINQ96PE5 141 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 ZCCHC4Q9H5U6 513 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 TNFRSF19Q9NS68 423 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 BABAM2Q9NXR7 383 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 TAS2R4Q9NYW5 299 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 EXOSC1Q9Y3B2 195 aaKnown RBP9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 KPTNQ9Y664 436 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 HSPE1-MOB4S4R3N1 261 aa9.51□□□□□ -0.89
CCDC88C-208ENST00000554165 A0A0U1RQK1 487 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 PNMA8CA0A1B0GUJ8 204 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 RNASEK-C17orf49H0YIS7 233 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 OGG1O15527 345 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 ZNF737O75373 536 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 KNG1P01042 644 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 CCDC159P0C7I6 412 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 MYL12AP19105 171 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 SLC9A3R2Q15599 337 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 C11orf91Q3C1V1 193 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 TMEM200BQ69YZ2 307 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 RPL22L1Q6P5R6 122 aaKnown RBP9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 RBMS3Q6XE24 437 aaKnown RBP9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 TMPRSS11AQ6ZMR5 421 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 ZNF561Q8N587 486 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 PARP16Q8N5Y8 322 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 ASCC1Q8N9N2 400 aaKnown RBP9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 OR52N4Q8NGI2 321 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 FAM216AQ8WUB2 273 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 TNFRSF14Q92956 283 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 EMG1Q92979 244 aaKnown RBP9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 SPSB1Q96BD6 273 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 COMMD4Q9H0A8 199 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 PAK1IP1Q9NWT1 392 aaPredicted RBP9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 DHDHQ9UQ10 334 aa9.5□□□□□ -0.89
CCDC88C-208ENST00000554165 EFCAB10A6NFE3 127 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 TRIM77I1YAP6 450 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 SLC1A7O00341 560 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 GPR37O15354 613 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 HOXA3O43365 443 aaPredicted RBP9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 SULT1B1O43704 296 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 MT-ND2P03891 347 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 TK1P04183 234 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 RPSAP08865 295 aaKnown RBP9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 OCM2P0CE71 109 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 OCMP0CE72 109 aaPredicted RBP9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 CCL3L1P16619 93 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 PRKACAP17612 351 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 PRTN3P24158 256 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 RPL31P62899 125 aaKnown RBP9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 ACTG1P63261 375 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 MRPL28Q13084 256 aaKnown RBP9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 ZNF273Q14593 569 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 PDCD1Q15116 288 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 DMKNQ6E0U4 476 aaPredicted RBP9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 HCP5Q6MZN7 132 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 C17orf107Q6ZR85 190 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 LHFPL2Q6ZUX7 228 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 SERPINA12Q8IW75 414 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 MKXQ8IYA7 352 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 FAM58AQ8N1B3 248 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 C11orf42Q8N5U0 333 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 KIR3DL3Q8N743 410 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 OR52N1Q8NH53 320 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 C17orf50Q8WW18 174 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 GHSRQ92847 366 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 JMJD8Q96S16 334 aa9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 MYCBPQ99417 103 aaPredicted RBP9.49□□□□□ -0.89
CCDC88C-208ENST00000554165 CHST6Q9GZX3 395 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms