RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 GPR148Q8TDV2 347 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 TFAP2CQ92754 450 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 LHX4Q969G2 390 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 ZDHHC16Q969W1 377 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 SLC25A28Q96A46 364 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 CPNE2Q96FN4 548 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-204ENST00000553324 PDCD1LG2Q9BQ51 273 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 PRDM13Q9H4Q3 707 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 METTL8Q9H825 291 aaKnown RBP12.64□□□□□ -0.39
SHMT2-204ENST00000553324 PLCXD1Q9NUJ7 323 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 OR14J1Q9UGF5 321 aa12.64□□□□□ -0.39
SHMT2-204ENST00000553324 IGHV1-69DA0A0B4J2H0 117 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 hCG_1809904A0A1W2PP81 198 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 A0A1W2PPE2 198 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 A0A1W2PR64 198 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 A0A1W2PRV1 198 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 MAGEB3O15480 346 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 IGHV1-69P01742 117 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 TK1P04183 234 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 CD2P06729 351 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 UBA52P62987 128 aaKnown RBP12.63□□□□□ -0.39
SHMT2-204ENST00000553324 ST3GAL4Q11206 333 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 PDZK1IP1Q13113 114 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 NCR3LG1Q68D85 454 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 BRD3OSQ6XYD6 125 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 VMO1Q7Z5L0 202 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 OR10AC1Q8NH08 325 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 OR52N1Q8NH53 320 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 FBLIM1Q8WUP2 373 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 TSEN15Q8WW01 171 aaKnown RBP12.63□□□□□ -0.39
SHMT2-204ENST00000553324 GGHQ92820 318 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 GCDHQ92947 438 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-204ENST00000553324 SLAMF9Q96A28 289 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 ZNF48Q96MX3 618 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-204ENST00000553324 VCX3BQ9H321 246 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 UNKLQ9H9P5 680 aaKnown RBP12.63□□□□□ -0.39
SHMT2-204ENST00000553324 ESM1Q9NQ30 184 aa12.63□□□□□ -0.39
SHMT2-204ENST00000553324 K7N7A8 449 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 OGG1O15527 345 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 SULT1B1O43704 296 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 TFF1P04155 84 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 GNAO1P09471 354 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 EEF1B2P24534 225 aaKnown RBP12.62□□□□□ -0.39
SHMT2-204ENST00000553324 POU3F4P49335 361 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 GTF2A1P52655 376 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-204ENST00000553324 RPL31P62899 125 aaKnown RBP12.62□□□□□ -0.39
SHMT2-204ENST00000553324 ACTG1P63261 375 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 CDK5R1Q15078 307 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 SAXO1Q8IYX7 474 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 FAM58AQ8N1B3 248 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-204ENST00000553324 ZSCAN4Q8NAM6 433 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-204ENST00000553324 OR13C9Q8NGT0 318 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 EMG1Q92979 244 aaKnown RBP12.62□□□□□ -0.39
SHMT2-204ENST00000553324 NKX1-2Q9UD57 310 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-204ENST00000553324 PSORS1C1Q9UIG5 152 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 ZNF281Q9Y2X9 895 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 PCDHGB5Q9Y5G0 923 aa12.62□□□□□ -0.39
SHMT2-204ENST00000553324 HCKP08631 526 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 RAB3AP20336 220 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 TAS2R43P59537 309 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 COL10A1Q03692 680 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 ZNF146Q15072 292 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 DEFB112Q30KQ8 113 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 SPIN3Q5JUX0 258 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 OR2G6Q5TZ20 316 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 FAM185AQ8N0U4 392 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 STX19Q8N4C7 294 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 TMEM86BQ8N661 226 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 BPIFB6Q8NFQ5 453 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 PPP1R35Q8TAP8 253 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 RPS4Y2Q8TD47 263 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 SMIM19Q96E16 107 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 SNX22Q96L94 193 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 CLEC2DQ9UHP7 191 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 FAM96BQ9Y3D0 163 aa12.61□□□□□ -0.39
SHMT2-204ENST00000553324 TMEM89A2RUT3 159 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 ERICH4A6NGS2 130 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 DNAJC9-AS1A6NH13 148 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 F8VVB4 439 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 F8VWA3 439 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 H0YHG0 523 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 INMTO95050 263 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 RNASE1P07998 156 aaKnown RBP12.6□□□□□ -0.39
SHMT2-204ENST00000553324 COMPP49747 757 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-204ENST00000553324 BMXP51813 675 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 UBE2E1P51965 193 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 SLC9A3R2Q15599 337 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 KISS1Q15726 138 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 C12orf54Q6X4T0 127 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 Q6YL49 198 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 GDPD3Q7L5L3 318 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 BATF2Q8N1L9 274 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 Q8N7P7 452 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 ASCC1Q8N9N2 400 aaKnown RBP12.6□□□□□ -0.39
SHMT2-204ENST00000553324 HMG20AQ9NP66 347 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 SIRT7Q9NRC8 400 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 ERGIC3Q9Y282 383 aa12.6□□□□□ -0.39
SHMT2-204ENST00000553324 SF3B6Q9Y3B4 125 aaKnown RBP12.6□□□□□ -0.39
SHMT2-204ENST00000553324 SH2D1BO14796 132 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms