RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SNAPC3Q92966 411 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 APOBEC3DQ96AK3 386 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 TAMM41Q96BW9 452 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 RRNAD1Q96FB5 475 aaKnown RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ZNF583Q96ND8 569 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 TECTBQ96PL2 329 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 OR4F4Q96R69 305 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 COQ7Q99807 217 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 B9D2Q9BPU9 175 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 OSBPL10Q9BXB5 764 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 POLR2J2Q9GZM3 115 aaKnown RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 POLR2J3Q9H1A7 115 aaKnown RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 MMADHCQ9H3L0 296 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ZNF702PQ9H963 129 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 OR6C3Q9NZP0 311 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DUX4Q9UBX2 424 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 FBXL17Q9UF56 701 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 RIMS3Q9UJD0 308 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 PRPF19Q9UMS4 504 aaKnown RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 PRELID1Q9Y255 219 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 CAB39Q9Y376 341 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 PAM16Q9Y3D7 125 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DYNC1H1Q14204 4646 aaKnown RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 A0A1W2PRD5 423 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 A0A1W2PRF3 423 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 A0A1W2PRM7 423 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 MEIOCA2RUB1 952 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 PRSS37A4D1T9 235 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 BTBD17A6NE02 478 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 CD300LBA8K4G0 201 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 A8MZ25 164 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 EVPLLA8MZ36 301 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 H3BUX3 64 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 BOLA2-SMG1P6H3BVE0 249 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 H7C1C5 153 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 IMPA2O14732 288 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 CHST1O43916 411 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 GMDSO60547 372 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 ACSM4P0C7M7 580 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 TROVE2P10155 538 aaKnown RBP eCLIP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 CTLA4P16410 223 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 ANXA7P20073 488 aaKnown RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 ANOS1P23352 680 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 EEF1B2P24534 225 aaKnown RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 CHATP28329 748 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 S100A5P33763 92 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 SAA4P35542 130 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 SLC15A1P46059 708 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 VEGFCP49767 419 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 ZP1P60852 638 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 LCN6P62502 163 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 PRB3Q04118 309 aaPredicted RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 PRKCDQ05655 676 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 KLRD1Q13241 179 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 AQP6Q13520 282 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 SELPLGQ14242 412 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 HNF4GQ14541 408 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 MESTQ5EB52 335 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 OTPQ5XKR4 325 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 C1orf94Q6P1W5 598 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 ZNF826PQ6ZT77 177 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 NAA40Q86UY6 237 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 C11orf42Q8N5U0 333 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 TEX45Q8NA69 505 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 BHLHE23Q8NDY6 225 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 OR4C13Q8NGP0 309 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 OR11L1Q8NGX0 322 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 OR2T6Q8NHC8 308 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 SLC7A13Q8TCU3 470 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 AENQ8WTP8 325 aaKnown RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 RORBQ92753 470 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 SLCO4A1Q96BD0 722 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 BPIFA2Q96DR5 249 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 SPDL1Q96EA4 605 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 PGAM5Q96HS1 289 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 Q96M85 177 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 CCL13Q99616 98 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 SSX3Q99909 188 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 CITED2Q99967 270 aaPredicted RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 FAM110AQ9BQ89 295 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 DCTN5Q9BTE1 182 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 HCAR1Q9BXC0 346 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 CDCA4Q9BXL8 241 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 SLC22A4Q9H015 551 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 NSRP1Q9H0G5 558 aaKnown RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 HRH4Q9H3N8 390 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 KAT8Q9H7Z6 458 aaKnown RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 WDR76Q9H967 626 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 RNPEPL1Q9HAU8 725 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 BATF3Q9NR55 127 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 SIRT7Q9NRC8 400 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 UFSP2Q9NUQ7 469 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 IL20Q9NYY1 176 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 MRPL15Q9P015 296 aaKnown RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 PAIP2BQ9ULR5 123 aaKnown RBP2.83□□□□□ -1.96
LIMA1-206ENST00000550611 ANGPT4Q9Y264 503 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 NDUFAF1Q9Y375 327 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 MED31Q9Y3C7 131 aa2.83□□□□□ -1.96
LIMA1-206ENST00000550611 SNX5Q9Y5X3 404 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms