RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 TMEM178AQ8NBL3 297 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 ZNF442Q9H7R0 627 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 FZR1Q9UM11 496 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 CHD8Q9HCK8 2581 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 ATRXP46100 2492 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 K7EM74 188 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 PRKACBP22694 351 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 CA6P23280 308 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 S100A11P31949 105 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 FOXF2Q12947 444 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 VWA1Q6PCB0 445 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 LHFPL2Q6ZUX7 228 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 OR5AP2Q8NGF4 316 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 UBALD1Q8TB05 177 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 WBP1Q96G27 269 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 POM121L2Q96KW2 1035 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 ZNF75AQ96N20 296 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 PHB2Q99623 299 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 TM2D1Q9BX74 207 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 GSKIPQ9P0R6 139 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 GPR132Q9UNW8 380 aa9.54□□□□□ -0.88
CUX1-212ENST00000547394 TRAV39A0A0B4J263 110 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 RPS10-NUDT3A0A1W2PQS6 291 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 MEX3AA1L020 520 aaKnown RBP9.53□□□□□ -0.88
CUX1-212ENST00000547394 SCO1O75880 301 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 ALDH3B1P43353 468 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 ESCO2Q56NI9 601 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 HAGHLQ6PII5 290 aaPredicted RBP9.53□□□□□ -0.88
CUX1-212ENST00000547394 SLC22A25Q6T423 547 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.53□□□□□ -0.88
CUX1-212ENST00000547394 BOLLQ8N9W6 283 aaKnown RBP9.53□□□□□ -0.88
CUX1-212ENST00000547394 MITD1Q8WV92 249 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 CXorf58Q96LI9 332 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 REPIN1Q9BWE0 567 aaKnown RBP9.53□□□□□ -0.88
CUX1-212ENST00000547394 LINC00470Q9BZP3 86 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 NARFLQ9H6Q4 476 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 ZDHHC11Q9H8X9 412 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 MBD2Q9UBB5 411 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 UBQLN2Q9UHD9 624 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 XRCC2O43543 280 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 CHATP28329 748 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 FUT6P51993 359 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 PLP2Q04941 152 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 RNPS1Q15287 305 aaKnown RBP9.53□□□□□ -0.88
CUX1-212ENST00000547394 PNLIPRP3Q17RR3 467 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 PHLDA2Q53GA4 152 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 TOR2AQ5JU69 321 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 FBXW9Q5XUX1 488 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 Q6ZSR3 168 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 OVCH2Q7RTZ1 564 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 GLRX5Q86SX6 157 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 PRDM14Q9GZV8 571 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 CD300LBA8K4G0 201 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 ZNF724A8MTY0 619 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 SERPINE3A8MV23 424 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 RHBDL1O75783 438 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 ACTL6AO96019 429 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 RLN2P04090 185 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 OR5H8P0DN80 308 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 ZNF250P15622 560 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 STK11Q15831 433 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 VAX1Q5SQQ9 334 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 COLCA1Q6ZS62 124 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 ZDHHC22Q8N966 263 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 SLC30A7Q8NEW0 376 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 OR1K1Q8NGR3 316 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 NEK7Q8TDX7 302 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 TAAR6Q96RI8 345 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 COQ3Q9NZJ6 369 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 MTCH1Q9NZJ7 389 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 GHRLQ9UBU3 117 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 ZNF107Q9UII5 783 aaPredicted RBP9.53□□□□□ -0.88
CUX1-212ENST00000547394 OSGIN2Q9Y236 505 aa9.53□□□□□ -0.88
CUX1-212ENST00000547394 DIDO1Q9BTC0 2240 aaKnown RBP9.52□□□□□ -0.88
CUX1-212ENST00000547394 HEATR1Q9H583 2144 aaKnown RBP9.52□□□□□ -0.88
CUX1-212ENST00000547394 IFNA7P01567 189 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 FCGR3AP08637 254 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 NAT1P18440 290 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 IGHV1-2P23083 117 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 PTGER4P35408 488 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 APLNRP35414 380 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 IGSF11Q5DX21 431 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 ZNF585AQ6P3V2 769 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 UNQ6126/PRO20091Q6UXV3 157 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 RPRMLQ8N4K4 120 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 OR11L1Q8NGX0 322 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 OR10C1Q96KK4 312 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 CHMP1AQ9HD42 196 aaPredicted RBP9.52□□□□□ -0.89
CUX1-212ENST00000547394 ANXA10Q9UJ72 324 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 MAB21L2Q9Y586 359 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 LOC105371267A0A1B0GV96 52 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 RFPL4AA6NLU0 287 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 RFPL4AL1F8VTS6 287 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 RPL36A-HNRNPH2H7BZ11 118 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 HS3ST1O14792 307 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 IL2RAP01589 272 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 TFF1P04155 84 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 MALLQ13021 153 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 TMEM128Q5BJH2 165 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 GSG1LQ6UXU4 331 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms