RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PRR13Q9NZ81 148 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 TNFSF18Q9UNG2 199 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 PROCRQ9UNN8 238 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 MGAQ8IWI9 3026 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 FOXI3A8MTJ6 420 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-209ENST00000544349 CRHP06850 196 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 CHRM2P08172 466 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 GSTP1P09211 210 aaKnown RBP12.33□□□□□ -0.44
VPS33A-209ENST00000544349 HOXB1P14653 301 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-209ENST00000544349 TDGF1P3P51864 188 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 IL13RA1P78552 427 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 FAM74A1Q5RGS3 127 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 KCTD9Q7L273 389 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 RPRMLQ8N4K4 120 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-209ENST00000544349 ZNF610Q8N9Z0 462 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 FBXW5Q969U6 566 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 TMEM230Q96A57 120 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 STARD10Q9Y365 291 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 LAMA5O15230 3695 aa12.33□□□□□ -0.44
VPS33A-209ENST00000544349 A0A1W2PR80 420 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 KCNAB3O43448 404 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 SNAPC5O75971 98 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 NRASP01111 189 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 NGFP01138 241 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 UBBP0CG47 229 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 NAT2P11245 290 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 ZNF14P17017 642 aaPredicted RBP12.32□□□□□ -0.44
VPS33A-209ENST00000544349 NAT1P18440 290 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 PTGFRP43088 359 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 ALDH3B1P43353 468 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 NPY4RP50391 375 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 RPS27AP62979 156 aaKnown RBP12.32□□□□□ -0.44
VPS33A-209ENST00000544349 MALLQ13021 153 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 CNN3Q15417 329 aaKnown RBP12.32□□□□□ -0.44
VPS33A-209ENST00000544349 TSC22D1Q15714 1073 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 EIF2S3LQ2VIR3 472 aaKnown RBP12.32□□□□□ -0.44
VPS33A-209ENST00000544349 C11orf87Q6NUJ2 197 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 SLC51BQ86UW2 128 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 C1orf162Q8NEQ5 155 aaPredicted RBP12.32□□□□□ -0.44
VPS33A-209ENST00000544349 SLC30A7Q8NEW0 376 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 ST8SIA2Q92186 375 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 SPSB1Q96BD6 273 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 NUP50Q9UKX7 468 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 INTS1Q8N201 2190 aaKnown RBP12.32□□□□□ -0.44
VPS33A-209ENST00000544349 ZNF816-ZNF321PA0A0X1KG74 233 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 IFNA6P05013 189 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 FAM87AP0C7U9 286 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 PI3P19957 117 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 TBPP20226 339 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 ZP3P21754 424 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 TIMP3P35625 211 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 WNT5AP41221 380 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 KCNRGQ8N5I3 272 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 NAXEQ8NCW5 288 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 PHB2Q99623 299 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 OPN3Q9H1Y3 402 aaPredicted RBP12.32□□□□□ -0.44
VPS33A-209ENST00000544349 C5orf66Q9H5L9 145 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 GHRLQ9UBU3 117 aa12.32□□□□□ -0.44
VPS33A-209ENST00000544349 EEF1E1-BLOC1S5C9J1V9 151 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 LGALS8O00214 317 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 HOXD4P09016 255 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-209ENST00000544349 SLC25A4P12235 298 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 MGMTP16455 207 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 HLA-GP17693 338 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 SERPINA2P20848 420 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 PRKACBP22694 351 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 LUMP51884 338 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-209ENST00000544349 BAMBIQ13145 260 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 TBC1D28Q2M2D7 210 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 MRPL21Q7Z2W9 205 aaKnown RBP12.31□□□□□ -0.44
VPS33A-209ENST00000544349 OR56B1Q8NGI3 324 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 PIGCQ92535 297 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 VRK1Q99986 396 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-209ENST00000544349 MED9Q9NWA0 146 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 DBX1A6NMT0 343 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 CELA3BP08861 270 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 ID4P47928 161 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 MTCP1P56278 107 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 UBA52P62987 128 aaKnown RBP12.31□□□□□ -0.44
VPS33A-209ENST00000544349 VAX1Q5SQQ9 334 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 MYPOPQ86VE0 399 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-209ENST00000544349 GALNT11Q8NCW6 608 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 OR51T1Q8NGJ9 327 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 OR13G1Q8NGZ3 307 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 MBD2Q9UBB5 411 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 GPR160Q9UJ42 338 aa12.31□□□□□ -0.44
VPS33A-209ENST00000544349 SPENQ96T58 3664 aaKnown RBP12.3□□□□□ -0.44
VPS33A-209ENST00000544349 FAM230AA0A1W2PPH8 454 aa12.3□□□□□ -0.44
VPS33A-209ENST00000544349 MSTNO14793 375 aa12.3□□□□□ -0.44
VPS33A-209ENST00000544349 BCL2L11O43521 198 aa12.3□□□□□ -0.44
VPS33A-209ENST00000544349 HTR3BO95264 441 aa12.3□□□□□ -0.44
VPS33A-209ENST00000544349 DUS4LO95620 317 aaKnown RBP12.3□□□□□ -0.44
VPS33A-209ENST00000544349 SERPINF1P36955 418 aa12.3□□□□□ -0.44
VPS33A-209ENST00000544349 IDH3GP51553 393 aaPredicted RBP12.3□□□□□ -0.44
VPS33A-209ENST00000544349 FGL1Q08830 312 aa12.3□□□□□ -0.44
VPS33A-209ENST00000544349 ARFRP1Q13795 201 aa12.3□□□□□ -0.44
VPS33A-209ENST00000544349 ZNF345Q14585 488 aa12.3□□□□□ -0.44
VPS33A-209ENST00000544349 P2RY6Q15077 328 aa12.3□□□□□ -0.44
VPS33A-209ENST00000544349 FAHD2BQ6P2I3 314 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms