RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	THBS4	P35443	961 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	ALDH3B1	P43353	468 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	CYB561	P49447	251 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNF84	P51523	738 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	F2RL1	P55085	397 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	B3GALT5-AS1	P59052	145 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	SGPP2	Q8IWX5	399 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	DMBX1	Q8NFW5	382 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	FBXO17	Q96EF6	278 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNF845	Q96IR2	970 aa	Predicted RBP	10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	TM2D1	Q9BX74	207 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	HES7	Q9BYE0	225 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	CRLF2	Q9HC73	371 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	FBXO9	Q9UK97	447 aa	Predicted RBP	10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	FRY	Q5TBA9	3013 aa		10.89	□□□□□ -0.67
RNF4-222	ENST00000541204	CCDC187	A0A096LP49	1063 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	LRRC3C	A6NJW4	275 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	COLCA2	A8K830	154 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	FAM157A	C9JC47	383 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	MSTN	O14793	375 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNHIT1	O43257	154 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	RRAD	P55042	308 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	SSPN	Q14714	243 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	RSPO1	Q2MKA7	263 aa	Predicted RBP	10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	GGNBP1	Q5YKI7	109 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	SLC16A14	Q7RTX9	510 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	GJC3	Q8NFK1	279 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	HAS2	Q92819	552 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	NABP1	Q96AH0	204 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	KIRREL1	Q96J84	757 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	TAAR9	Q96RI9	348 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	PRRX2	Q99811	253 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	LIME1	Q9H400	295 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	PARP11	Q9NR21	331 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204		V9GYS6	101 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	MTRF1	O75570	445 aa	Known RBP	10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	B4GALT1	P15291	398 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	SMCO1	Q147U7	214 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNF239	Q16600	458 aa	Known RBP	10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	NSUN5P2	Q63ZY6	315 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	DHRS13	Q6UX07	377 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	NAXE	Q8NCW5	288 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	OR10D3	Q8NH80	312 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	SECTM1	Q8WVN6	248 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	TMEM54	Q969K7	222 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	ERGIC1	Q969X5	290 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	CHST5	Q9GZS9	411 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	PLA2G3	Q9NZ20	509 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNF581	Q9P0T4	197 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	LRFN1	Q9P244	771 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	AMDHD2	Q9Y303	409 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	FAM186A	A6NE01	2351 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	PQLC2L	A1A4F0	135 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	CRYM-AS1	A6NIL9	109 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	JTB	O76095	146 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	VAMP5	O95183	116 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	TMEM225B	P0DP42	221 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	CTSS	P25774	331 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	SRD5A2	P31213	254 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	PPT1	P50897	306 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	DVL1P1	P54792	670 aa	Predicted RBP	10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	CHAF1B	Q13112	559 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	SWI5	Q1ZZU3	235 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	SP6	Q3SY56	376 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	RPUSD3	Q6P087	351 aa	Known RBP	10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	GGN	Q86UU5	652 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	OR2AE1	Q8NHA4	323 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	SFT2D1	Q8WV19	159 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	USB1	Q9BQ65	265 aa	Known RBP	10.88	□□□□□ -0.67
RNF4-222	ENST00000541204	FAAP24	Q9BTP7	215 aa		10.88	□□□□□ -0.67
RNF4-222	ENST00000541204		A0A0U1RQV5	110 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	ANGPTL7	O43827	346 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	IFNA21	P01568	189 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	IGHE	P01854	428 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	CELA3A	P09093	270 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	RAC3	P60763	192 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	LSM6	P62312	80 aa	Known RBP	10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	LINC00696	Q6ZRV3	163 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	SKA3	Q8IX90	412 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	ABHD3	Q8WU67	409 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	PP6455	Q8WZ26	134 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	PSMF1	Q92530	271 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	TOMM40L	Q969M1	308 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	BSCL2	Q96G97	398 aa	Predicted RBP	10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	CLCC1	Q96S66	551 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	GPR173	Q9NS66	373 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	CACFD1	Q9UGQ2	172 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	TUBD1	Q9UJT1	453 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	PCSK5	Q92824	1860 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	GJE1	A6NN92	205 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204		M0R135	149 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	SERPINA7	P05543	415 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	CTSD	P07339	412 aa	Predicted RBP	10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	OR5H8	P0DN80	308 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	OPRM1	P35372	400 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	RGS19	P49795	217 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	MEOX2	P50222	304 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	PIGP	P57054	158 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	SNAI3	Q3KNW1	292 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNF774	Q6NX45	483 aa		10.87	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms