RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MYOZ1Q9NP98 299 aaPredicted RBP8.85□□□□□ -0.99
VPS33A-204ENST00000540669 DLL4Q9NR61 685 aa8.85□□□□□ -0.99
VPS33A-204ENST00000540669 TMEM106BQ9NUM4 274 aa8.85□□□□□ -0.99
VPS33A-204ENST00000540669 RBFOX1Q9NWB1 397 aaKnown RBP8.85□□□□□ -0.99
VPS33A-204ENST00000540669 C1orf123Q9NWV4 160 aa8.85□□□□□ -0.99
VPS33A-204ENST00000540669 PTTG2Q9NZH5 202 aa8.85□□□□□ -0.99
VPS33A-204ENST00000540669 DAPK2Q9UIK4 370 aa8.85□□□□□ -0.99
VPS33A-204ENST00000540669 SPATA2Q9UM82 520 aa8.85□□□□□ -0.99
VPS33A-204ENST00000540669 PPP1R3CQ9UQK1 317 aa8.85□□□□□ -0.99
VPS33A-204ENST00000540669 A0A096LNT2 108 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A10PA6NDY2 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A18PA6NE21 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A16PA6NEW6 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A20PA6NIJ5 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A8PA6NJQ4 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A7PA6NKC0 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A22PA8MWA6 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A12PA8MX19 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A5PA8MXJ8 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A23PA8MXZ1 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 VWC2LB2RUY7 222 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 CDC14BO60729 498 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 LY6HO94772 140 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 PAHP00439 452 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 IGHV2-70P01814 119 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 GRPP07492 148 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A15PP0C7V4 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A13PP0C7W8 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A14PP0C7W9 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 FAM90A24PP0C7X0 464 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 BCL3P20749 454 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 RBMXP38159 391 aaKnown RBP8.84□□□□□ -0.99
VPS33A-204ENST00000540669 RORCP51449 518 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 BMXP51813 675 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 EFNB2P52799 333 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 RBM11P57052 281 aaKnown RBP8.84□□□□□ -0.99
VPS33A-204ENST00000540669 RPS27AP62979 156 aaKnown RBP8.84□□□□□ -0.99
VPS33A-204ENST00000540669 PAX5Q02548 391 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 P2RY14Q15391 338 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 SHEQ5VZ18 495 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 AWAT2Q6E213 333 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 GLIPR1L1Q6UWM5 242 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 ACP7Q6ZNF0 438 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 LINC00299Q6ZSB3 139 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 OR51D1Q8NGF3 324 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 OR5H6Q8NGV6 325 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 LRRC29Q8WV35 223 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 SLAMF9Q96A28 289 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 ZNF488Q96MN9 340 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 NUDT16L1Q9BRJ7 211 aaKnown RBP8.84□□□□□ -0.99
VPS33A-204ENST00000540669 WDR13Q9H1Z4 485 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 ABCG5Q9H222 651 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 PLGRKTQ9HBL7 147 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 BARX1Q9HBU1 254 aaPredicted RBP8.84□□□□□ -0.99
VPS33A-204ENST00000540669 UFSP2Q9NUQ7 469 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 RASL12Q9NYN1 266 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 RNF7Q9UBF6 113 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 IL36RNQ9UBH0 155 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 NPTNQ9Y639 398 aa8.84□□□□□ -0.99
VPS33A-204ENST00000540669 IGKV1D-17A0A075B6S4 117 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 IGHV3-64DA0A0J9YX35 117 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 F5H0A9 414 aaPredicted RBP8.83□□□□□ -1
VPS33A-204ENST00000540669 RAB27BO00194 218 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 WNT9BO14905 357 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 FCN3O75636 299 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 KNG1P01042 644 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 SNRPBP14678 240 aaKnown RBP8.83□□□□□ -1
VPS33A-204ENST00000540669 DAOP14920 347 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 ARSBP15848 533 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 MUC1P15941 1255 aaPredicted RBP8.83□□□□□ -1
VPS33A-204ENST00000540669 MGMTP16455 207 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 COL8A2P25067 703 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 MNDAP41218 407 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 RANBP1P43487 201 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 GPR176Q14439 515 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 ZMYND11Q15326 602 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 C2orf76Q3KRA6 126 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 ZNF404Q494X3 552 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 SPIN3Q5JUX0 258 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 ATPAF1Q5TC12 328 aaPredicted RBP8.83□□□□□ -1
VPS33A-204ENST00000540669 SIGIRRQ6IA17 410 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 OR10K2Q6IF99 312 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 Q6P435 159 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 LINC00596Q86U02 117 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 ANGPTL6Q8NI99 470 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 KCNG3Q8TAE7 436 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 ZNF671Q8TAW3 534 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 GPER1Q99527 375 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 VRK1Q99986 396 aaPredicted RBP8.83□□□□□ -1
VPS33A-204ENST00000540669 DCUN1D5Q9BTE7 237 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 CST11Q9H112 138 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 DNTTIP1Q9H147 329 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 CHODLQ9H9P2 273 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.83□□□□□ -1
VPS33A-204ENST00000540669 DECR2Q9NUI1 292 aa8.83□□□□□ -1
VPS33A-204ENST00000540669 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.82□□□□□ -14e-9■■■■■ 34.1
VPS33A-204ENST00000540669 CCDC160A6NGH7 325 aa8.82□□□□□ -1
VPS33A-204ENST00000540669 A6NLC8 198 aa8.82□□□□□ -1
VPS33A-204ENST00000540669 CYSRT1A8MQ03 144 aa8.82□□□□□ -1
VPS33A-204ENST00000540669 TRAPPC2LH3BP13 241 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms