RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 PCSK5Q92824 1860 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 C19orf67A6NJJ6 358 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 IGHV3-9P01782 118 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 PCBD1P61457 104 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 FAM3AP98173 230 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 ZNF92Q03936 586 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 TIPARPQ7Z3E1 657 aaKnown RBP11.42□□□□□ -0.58
LDLR-203ENST00000535915 FNDC9Q8TBE3 224 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 DYRK2Q92630 601 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 ARL11Q969Q4 196 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 SLC5A7Q9GZV3 580 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 TMEM100Q9NV29 134 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 P4HTMQ9NXG6 502 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 DNAJB11Q9UBS4 358 aa11.42□□□□□ -0.58
LDLR-203ENST00000535915 PINLYPA6NC86 204 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 CRYM-AS1A6NIL9 109 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 ZNF205O95201 554 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 FCGR3AP08637 254 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 CHATP28329 748 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 SSPNQ14714 243 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 SWI5Q1ZZU3 235 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 KRTAP27-1Q3LI81 207 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 ZNF528Q3MIS6 628 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 RIPPLY2Q5TAB7 128 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 H3F3CQ6NXT2 135 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 C1orf210Q8IVY1 113 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 OSR2Q8N2R0 312 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 OR10AD1Q8NGE0 317 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 PIGCQ92535 297 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 CPNE4Q96A23 557 aaPredicted RBP11.41□□□□□ -0.58
LDLR-203ENST00000535915 LIME1Q9H400 295 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 ZNF391Q9UJN7 358 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 SLC7A11Q9UPY5 501 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 IGKV1-12A0A0C4DH73 117 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 FAM221AA4D161 298 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 ZNF705EA8MWA4 302 aaPredicted RBP11.41□□□□□ -0.58
LDLR-203ENST00000535915 IGKV1D-12P01611 117 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 CD79AP11912 226 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 PIGPP57054 158 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 PLCXD3Q63HM9 321 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 TMEM42Q69YG0 159 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 RAB11FIP2Q7L804 512 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 FBXL14Q8N1E6 418 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 RGCCQ9H4X1 137 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 COLQQ9Y215 455 aaPredicted RBP11.41□□□□□ -0.58
LDLR-203ENST00000535915 ST3GAL6Q9Y274 331 aa11.41□□□□□ -0.58
LDLR-203ENST00000535915 hCG_38984A0A1B0GV85 526 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 TMEM218A2RU14 115 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 CYTIPO60759 359 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 ACTL6AO96019 429 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 IFNA21P01568 189 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 SERPINA7P05543 415 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 DTYMKP23919 212 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 FUT6P51993 359 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 FXYD4P59646 89 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 SPINK14Q6IE38 97 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 ASCL4Q6XD76 172 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 CNTNAP3BQ96NU0 1288 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 TSNAXQ99598 290 aaKnown RBP11.4□□□□□ -0.58
LDLR-203ENST00000535915 CNTNAP3Q9BZ76 1288 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 BCO1Q9HAY6 547 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 DECR2Q9NUI1 292 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 PQLC2LA1A4F0 135 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 ATG12O94817 140 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 FARS2O95363 451 aaKnown RBP11.4□□□□□ -0.58
LDLR-203ENST00000535915 FAM157CP0CG43 387 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 ZNF728P0DKX0 622 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 ACP1P24666 158 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 ABCA11PQ4W5N1 156 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 TMEM88Q6PEY1 159 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 MRPL24Q96A35 216 aaKnown RBP11.4□□□□□ -0.58
LDLR-203ENST00000535915 LRFN1Q9P244 771 aa11.4□□□□□ -0.58
LDLR-203ENST00000535915 SHANK1Q9Y566 2161 aa11.4□□□□□ -0.59
LDLR-203ENST00000535915 TERTO14746 1132 aaKnown RBP11.39□□□□□ -0.59
LDLR-203ENST00000535915 FABP1P07148 127 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 HKR1P10072 659 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 ZNF708P17019 499 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 GFRA1P56159 465 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 PDZK1IP1Q13113 114 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 SMCO1Q147U7 214 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 PDCD1Q15116 288 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 GGNBP1Q5YKI7 109 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 RPL7L1Q6DKI1 246 aaKnown RBP11.39□□□□□ -0.59
LDLR-203ENST00000535915 HAGHLQ6PII5 290 aaPredicted RBP11.39□□□□□ -0.59
LDLR-203ENST00000535915 SLC22A25Q6T423 547 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 DHRS11Q6UWP2 260 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 ZNF100Q8IYN0 542 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 NANPQ8TBE9 248 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 THOC3Q96J01 351 aaKnown RBP11.39□□□□□ -0.59
LDLR-203ENST00000535915 RYDENQ9NUL5 291 aaKnown RBP11.39□□□□□ -0.59
LDLR-203ENST00000535915 KCNIP3Q9Y2W7 256 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 MRPS18CQ9Y3D5 142 aaKnown RBP11.39□□□□□ -0.59
LDLR-203ENST00000535915 SCGB1D2O95969 90 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 RFC3P40938 356 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 SRYQ05066 204 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 SP6Q3SY56 376 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 OR2A2Q6IF42 318 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 TCEAL6Q6IPX3 200 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 TCEAL3Q969E4 200 aa11.39□□□□□ -0.59
LDLR-203ENST00000535915 MARS2Q96GW9 593 aaKnown RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms