RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 BDH1Q02338 343 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 ACSM1Q08AH1 577 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 MKXQ8IYA7 352 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 BATF2Q8N1L9 274 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 ZNF561Q8N587 486 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 WDFY2Q96P53 400 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 SPACA5Q96QH8 159 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 SLC25A10Q9UBX3 287 aaPredicted RBP10.7□□□□□ -0.7
VPS28-216ENST00000533806 ZNF69Q9UC07 566 aa10.7□□□□□ -0.7
VPS28-216ENST00000533806 PTGES3LE9PB15 166 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 TCF21O43680 179 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 ZNF737O75373 536 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 GPX5O75715 221 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 KDM4BO94953 1096 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 ALDOBP05062 364 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 IGFBP3P17936 291 aaPredicted RBP10.69□□□□□ -0.7
VPS28-216ENST00000533806 CRHBPP24387 322 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 GABRA2P47869 451 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 SOX2P48431 317 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 CEBPDP49716 269 aaPredicted RBP10.69□□□□□ -0.7
VPS28-216ENST00000533806 TAS2R43P59537 309 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 SRSF2Q01130 221 aaKnown RBP10.69□□□□□ -0.7
VPS28-216ENST00000533806 SCGB2A2Q13296 93 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 KISS1Q15726 138 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 YIF1BQ5BJH7 314 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 ARMCX4Q5H9R4 360 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 C1orf122Q6ZSJ8 110 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 Q8IYB0 196 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 SAXO1Q8IYX7 474 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 KIR3DL3Q8N743 410 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 Q8N7P7 452 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 ZFP41Q8N8Y5 198 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 OR51A2Q8NGJ7 313 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 OR13C5Q8NGS8 318 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 TSEN15Q8WW01 171 aaKnown RBP10.69□□□□□ -0.7
VPS28-216ENST00000533806 MYDGFQ969H8 173 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 TMEM106AQ96A25 262 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 RAB26Q9ULW5 256 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 ERGIC3Q9Y282 383 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 KPTNQ9Y664 436 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 DOCK11Q5JSL3 2073 aa10.69□□□□□ -0.7
VPS28-216ENST00000533806 TRBV5-7A0A0A0MS05 114 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 K7N7A8 449 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 SPRY1O43609 319 aaPredicted RBP10.68□□□□□ -0.7
VPS28-216ENST00000533806 TOX4O94842 621 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 VENTXO95231 258 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 TK1P04183 234 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 OCM2P0CE71 109 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 RAB3AP20336 220 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 BCL3P20749 454 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 VHLP40337 213 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 HILS1P60008 231 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 ARF6P62330 175 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 ZNF146Q15072 292 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 KRTAP24-1Q3LI83 254 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 ASCL4Q6XD76 172 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 BCL6BQ8N143 479 aaPredicted RBP10.68□□□□□ -0.7
VPS28-216ENST00000533806 FAM58AQ8N1B3 248 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 ZSCAN4Q8NAM6 433 aaPredicted RBP10.68□□□□□ -0.7
VPS28-216ENST00000533806 Q8NFD4 153 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 TNFRSF14Q92956 283 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 OR5M11Q96RB7 305 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 SLC6A7Q99884 636 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 FAM234AQ9H0X4 552 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 PRDM13Q9H4Q3 707 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 UNKLQ9H9P5 680 aaKnown RBP10.68□□□□□ -0.7
VPS28-216ENST00000533806 RHOFQ9HBH0 211 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 HMG20AQ9NP66 347 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 RBFOX1Q9NWB1 397 aaKnown RBP10.68□□□□□ -0.7
VPS28-216ENST00000533806 SCN3BQ9NY72 215 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 TAS2R4Q9NYW5 299 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 IL36RNQ9UBH0 155 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 TPRKBQ9Y3C4 175 aa10.68□□□□□ -0.7
VPS28-216ENST00000533806 SOX21Q9Y651 276 aaPredicted RBP10.68□□□□□ -0.7
VPS28-216ENST00000533806 TRBV23-1A0A0A0MS06 115 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 CENPVL3A0A0U1RRI6 287 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 TMEM82A0PJX8 343 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 MYL12BO14950 172 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 ANGPTL7O43827 346 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 CD2P06729 351 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 CHRM2P08172 466 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 CELP19835 753 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 FPR2P25090 351 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 POU3F4P49335 361 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 BPIFB3P59826 476 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 COL10A1Q03692 680 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 Q499Y3 187 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 C17orf107Q6ZR85 190 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 C11orf42Q8N5U0 333 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 TMEM185AQ8NFB2 350 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 OR52N4Q8NGI2 321 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 C22orf15Q8WYQ4 148 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 RFT1Q96AA3 541 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 ORAI1Q96D31 301 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 ZNF48Q96MX3 618 aaPredicted RBP10.67□□□□□ -0.7
VPS28-216ENST00000533806 PCGF1Q9BSM1 259 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 MND1Q9BWT6 205 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 OCEL1Q9H607 264 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 ELL3Q9HB65 397 aaPredicted RBP10.67□□□□□ -0.7
VPS28-216ENST00000533806 NEK6Q9HC98 313 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms