RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PARP16Q8N5Y8 322 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 OR5T2Q8NGG2 359 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 NANPQ8TBE9 248 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 CHPT1Q8WUD6 406 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 TSEN15Q8WW01 171 aaKnown RBP12.48□□□□□ -0.41
CPSF1-208ENST00000532560 RGP1Q92546 391 aaPredicted RBP12.48□□□□□ -0.41
CPSF1-208ENST00000532560 SGCDQ92629 289 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 SMIM19Q96E16 107 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 GAFA1Q96PS6 74 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 HES4Q9HCC6 221 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 DUX4Q9UBX2 424 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 ZNF222Q9UK12 451 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 DHDHQ9UQ10 334 aa12.48□□□□□ -0.41
CPSF1-208ENST00000532560 IGKV1D-17A0A075B6S4 117 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 MYL12BO14950 172 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 GPR37O15354 613 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 SIGLEC5O15389 551 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 OGG1O15527 345 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 ECDO95905 644 aaPredicted RBP12.47□□□□□ -0.41
CPSF1-208ENST00000532560 LALBAP00709 142 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 PSG2P11465 335 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 ADRA2CP18825 462 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 AZGP1P25311 298 aaKnown RBP12.47□□□□□ -0.41
CPSF1-208ENST00000532560 PSMB9P28065 219 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 C21orf33P30042 268 aaPredicted RBP12.47□□□□□ -0.41
CPSF1-208ENST00000532560 RBP2P50120 134 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 ATP1B3P54709 279 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 TAS2R43P59537 309 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 ERVK11-1P61568 191 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 IL13RA1P78552 427 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 SPCS2Q15005 226 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 LHFPL2Q6ZUX7 228 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 ANGPTL5Q86XS5 388 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 GPR148Q8TDV2 347 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 GATAD2BQ8WXI9 593 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 MED30Q96HR3 178 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 ZNF488Q96MN9 340 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 OPALINQ96PE5 141 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 ERGIC3Q9Y282 383 aa12.47□□□□□ -0.41
CPSF1-208ENST00000532560 SIRT4Q9Y6E7 314 aaPredicted RBP12.47□□□□□ -0.41
CPSF1-208ENST00000532560 SVEP1Q4LDE5 3571 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 NDUFB3O43676 98 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 ALX3O95076 343 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 NXPH2O95156 264 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 LIPFP07098 398 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 IKZF1Q13422 519 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 RGS21Q2M5E4 152 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 TIMM50Q3ZCQ8 353 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 LRRC10Q5BKY1 277 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 ARMCX4Q5H9R4 360 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 RNLSQ5VYX0 342 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 DMKNQ6E0U4 476 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-208ENST00000532560 ZNF367Q7RTV3 350 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 SERPINA12Q8IW75 414 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 PNLDC1Q8NA58 520 aaKnown RBP12.46□□□□□ -0.41
CPSF1-208ENST00000532560 OR13C9Q8NGT0 318 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 DYNC2LI1Q8TCX1 351 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 ST8SIA4Q92187 359 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 UPRTQ96BW1 309 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 SDSLQ96GA7 329 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 CEP19Q96LK0 163 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 ZCCHC4Q9H5U6 513 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 NEK6Q9HC98 313 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 METRNQ9UJH8 293 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 ZNF281Q9Y2X9 895 aa12.46□□□□□ -0.41
CPSF1-208ENST00000532560 MXRA5Q9NR99 2828 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 SULT1B1O43704 296 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 PLATP00750 562 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 TFF1P04155 84 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 OCM2P0CE71 109 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 OCMP0CE72 109 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-208ENST00000532560 SELLP14151 372 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 CD36P16671 472 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 EPHA1P21709 976 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 MTCP1P56278 107 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 CAV3P56539 151 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 WNT4P56705 351 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 USP43Q70EL4 1123 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 SLC25A26Q70HW3 274 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 BTN2A1Q7KYR7 527 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 ZNF554Q86TJ5 538 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 Q8IYB0 196 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 FGFRL1Q8N441 504 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 NANOGP1Q8N7R0 232 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 OR5D14Q8NGL3 314 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 PGLYRP3Q96LB9 341 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 DMRTB1Q96MA1 342 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 CDCA4Q9BXL8 241 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 AKIP1Q9NQ31 210 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 MTCH1Q9NZJ7 389 aa12.45□□□□□ -0.42
CPSF1-208ENST00000532560 SLC25A10Q9UBX3 287 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-208ENST00000532560 RPUSD1Q9UJJ7 312 aaKnown RBP12.45□□□□□ -0.42
CPSF1-208ENST00000532560 RFPL4AA6NLU0 287 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 ZNF879B4DU55 563 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 RFPL4AL1F8VTS6 287 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 KNG1P01042 644 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 CD2P06729 351 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 TGFBR2P37173 567 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 MAP2K4P45985 399 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 GABRA2P47869 451 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms