RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 A0A1W2PQL4 384 aaPredicted RBP11.94□□□□□ -0.5
VPS28-215ENST00000531924 hADV38S2A0JD32 116 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 MEX3AA1L020 520 aaKnown RBP11.94□□□□□ -0.5
VPS28-215ENST00000531924 C17orf98A8MV24 154 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 SULT1C4O75897 302 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 APOL3O95236 402 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 OCM2P0CE71 109 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 OCMP0CE72 109 aaPredicted RBP11.94□□□□□ -0.5
VPS28-215ENST00000531924 CCL1P22362 96 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 GABRR1P24046 479 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 HTR1FP30939 366 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 ERVK11-1P61568 191 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 EFNB1P98172 346 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 CNN3Q15417 329 aaKnown RBP11.94□□□□□ -0.5
VPS28-215ENST00000531924 SSX2Q16385 188 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 C1orf146Q5VVC0 180 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 KDM4DQ6B0I6 523 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 SLC25A26Q70HW3 274 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 LHFPL4Q7Z7J7 247 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 CATSPERDQ86XM0 798 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 Q8IYB0 196 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 ENTHD1Q8IYW4 607 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 C11orf42Q8N5U0 333 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 EMG1Q92979 244 aaKnown RBP11.94□□□□□ -0.5
VPS28-215ENST00000531924 ZNF714Q96N38 554 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 CDCA4Q9BXL8 241 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 RIBC2Q9H4K1 309 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 GLS2Q9UI32 602 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 GNG8Q9UK08 70 aa11.94□□□□□ -0.5
VPS28-215ENST00000531924 VGLL3A8MV65 326 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 F2RL2O00254 374 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 CHST1O43916 411 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 FBXO24O75426 580 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 RBP4P02753 201 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 OPN1MWP04001 364 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 UBCP0CG48 685 aaKnown RBP11.93□□□□□ -0.5
VPS28-215ENST00000531924 OPN1MW2P0DN77 364 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 OPN1MW3P0DN78 364 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 PEX2P28328 305 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 RAB13P51153 203 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 ATP1B3P54709 279 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 MEF2CQ06413 473 aaPredicted RBP11.93□□□□□ -0.5
VPS28-215ENST00000531924 UBE2V2Q15819 145 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 NSUN5P1Q3KNT7 163 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 Q6ZSR3 168 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 SSX6Q7RTT6 188 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 AMIGO2Q86SJ2 522 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 OR8H2Q8N162 312 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 SNX22Q96L94 193 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 CIB1Q99828 191 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 PRSS22Q9GZN4 317 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 CHST5Q9GZS9 411 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 GABARAPL1Q9H0R8 117 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 MTCH1Q9NZJ7 389 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 TCF19Q9Y242 345 aa11.93□□□□□ -0.5
VPS28-215ENST00000531924 FAM90A8PA6NJQ4 464 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 HAND1O96004 215 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 IGHV1-8P0DP01 117 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 ZNF20P17024 532 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 RBP2P50120 134 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 DLX6P56179 175 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 CDC42P60953 191 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 EMX1Q04741 257 aaPredicted RBP11.92□□□□□ -0.5
VPS28-215ENST00000531924 SLC34A1Q06495 639 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 TMED1Q13445 227 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 GRK1Q15835 563 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 CRIP3Q6Q6R5 217 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 ZBTB49Q6ZSB9 765 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 TRAPPC6BQ86SZ2 158 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 TMEM219Q86XT9 240 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 ZNF676Q8N7Q3 588 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 OR4S1Q8NGB4 309 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 OR11H6Q8NGC7 330 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 OR8J1Q8NGP2 316 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 NDNFQ8TB73 568 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 PIFOQ8TCI5 191 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 PP6455Q8WZ26 134 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 CFHR4Q92496 578 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 C10orf35Q96D05 121 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 IMPAD1Q9NX62 359 aa11.92□□□□□ -0.5
VPS28-215ENST00000531924 TET2Q6N021 2002 aaPredicted RBP11.91□□□□□ -0.5
VPS28-215ENST00000531924 LOC107986453A0A1B0GWG9 222 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 F8VVB4 439 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 F8VWA3 439 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 DYNC1I1O14576 645 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 ZNF737O75373 536 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 ALDOBP05062 364 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 PRKACBP22694 351 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 POU3F4P49335 361 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 MTCP1P56278 107 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 ACTA2P62736 377 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 ACTG2P63267 376 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 ACTC1P68032 377 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 ACTA1P68133 377 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 ZNF626Q68DY1 528 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 HIST2H2BDQ6DRA6 164 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 LYG1Q8N1E2 194 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 DYNAPQ8N1N2 210 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 CAPSLQ8WWF8 208 aa11.91□□□□□ -0.5
VPS28-215ENST00000531924 CHST6Q9GZX3 395 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms