RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PTTG2Q9NZH5 202 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 NLKQ9UBE8 527 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 CTSZQ9UBR2 303 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 CKLFQ9UBR5 152 aa12.06□□□□□ -0.48
CPSF1-206ENST00000531480 IGKV1D-17A0A075B6S4 117 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 IGKV1-12A0A0C4DH73 117 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 F8VVB4 439 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 F8VWA3 439 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 PDCD5O14737 125 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 IGKV1D-12P01611 117 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 HCKP08631 526 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 HOXB4P17483 251 aaPredicted RBP12.05□□□□□ -0.48
CPSF1-206ENST00000531480 GADD45AP24522 165 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 BDKRB2P30411 391 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 NPY4RP50391 375 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 SEC61A1P61619 476 aaKnown RBP12.05□□□□□ -0.48
CPSF1-206ENST00000531480 PPP3R1P63098 170 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 FABP5Q01469 135 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 PAX2Q02962 417 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 SMIM21Q3B7S5 101 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 ZNF788Q6ZQV5 615 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 TPRA1Q86W33 373 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 BOLLQ8N9W6 283 aaKnown RBP12.05□□□□□ -0.48
CPSF1-206ENST00000531480 DEFB108BQ8NET1 73 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 AP3S1Q92572 193 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 NEIL1Q96FI4 390 aaPredicted RBP12.05□□□□□ -0.48
CPSF1-206ENST00000531480 ZNF488Q96MN9 340 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 RBM38Q9H0Z9 239 aaKnown RBP12.05□□□□□ -0.48
CPSF1-206ENST00000531480 PCDHB10Q9UN67 800 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 ARHGAP32A7KAX9 2087 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 NF1P21359 2839 aa12.05□□□□□ -0.48
CPSF1-206ENST00000531480 NAV3Q8IVL0 2385 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 SVEP1Q4LDE5 3571 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 HIVEP2P31629 2446 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 IGHV3OR15-7A0A075B7D8 119 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 OR2AT4A6NND4 320 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 H3BMQ9 156 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 GABRPO00591 440 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 MAGEB3O15480 346 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 IL1AP01583 271 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 GYPAP02724 150 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 MSMBP08118 114 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 PSG2P11465 335 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 RPS2P15880 293 aaKnown RBP12.04□□□□□ -0.48
CPSF1-206ENST00000531480 ADRA2CP18825 462 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 ZFP36P26651 326 aaKnown RBP12.04□□□□□ -0.48
CPSF1-206ENST00000531480 DVL1P1P54792 670 aaPredicted RBP12.04□□□□□ -0.48
CPSF1-206ENST00000531480 FAM27D1Q5T7N8 215 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 ELP2Q6IA86 826 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 CLEC9AQ6UXN8 241 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 LINC00299Q6ZSB3 139 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 NLRC3Q7RTR2 1065 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 CEACAM19Q7Z692 300 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 LRRTM1Q86UE6 522 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 NKAIN3Q8N8D7 197 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 OR51F2Q8NH61 342 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 TMEM203Q969S6 136 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 SDSLQ96GA7 329 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 TMEM160Q9NX00 188 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 DNAJB11Q9UBS4 358 aa12.04□□□□□ -0.48
CPSF1-206ENST00000531480 A0A1W2PPK0 400 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 MEGF11A6BM72 1044 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 SIGLEC5O15389 551 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 SPRY1O43609 319 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-206ENST00000531480 FOXH1O75593 365 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 NXPH2O95156 264 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 KNG1P01042 644 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 OCMP0CE72 109 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-206ENST00000531480 ZNF16P17020 682 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-206ENST00000531480 SRMP19623 302 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 ZNF93P35789 620 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-206ENST00000531480 NPBWR2P48146 333 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 PITPNBP48739 271 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 POU3F4P49335 361 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 RORCP51449 518 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 ZNF146Q15072 292 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 CTF1Q16619 201 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 CNPY1Q3B7I2 92 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 DDI2Q5TDH0 399 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 WDR25Q64LD2 544 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-206ENST00000531480 C1QL2Q7Z5L3 287 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 OR8B3Q8NGG8 313 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 SLAMF9Q96A28 289 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 RFT1Q96AA3 541 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 GAFA1Q96PS6 74 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 OR8B2Q96RD0 313 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 IL36GQ9NZH8 169 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 WNK2Q9Y3S1 2297 aa12.03□□□□□ -0.48
CPSF1-206ENST00000531480 SONP18583 2426 aaKnown RBP12.02□□□□□ -0.48
CPSF1-206ENST00000531480 NIPBLQ6KC79 2804 aaeCLIP12.02□□□□□ -0.48
CPSF1-206ENST00000531480 TRAV20A0A0B4J274 112 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 TRAPPC2LH3BP13 241 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 ADAM20O43506 726 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 CYB5AP00167 134 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 TGFAP01135 160 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 SFTPBP07988 381 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 BCL3P20749 454 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 PTGFRP43088 359 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 HSD17B12Q53GQ0 312 aa12.02□□□□□ -0.49
CPSF1-206ENST00000531480 ESCO2Q56NI9 601 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms