RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 LHX4Q969G2 390 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 APH1AQ96BI3 265 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 HDHD3Q9BSH5 251 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 PLEKHA3Q9HB20 300 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 SLC2A8Q9NY64 477 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 CCDC187A0A096LP49 1063 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 C17orf112F2Z3M2 114 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 CLDN15P56746 228 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 POLR2GP62487 172 aaKnown RBP eCLIP7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 LTC4SQ16873 150 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 LYZL2Q7Z4W2 148 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 ZDHHC23Q8IYP9 409 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 OR5AS1Q8N127 324 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 OR2I1PQ8NGU4 316 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 IFI44Q8TCB0 444 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 MYOZ1Q9NP98 299 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 SIT1Q9Y3P8 196 aa7.41□□□□□ -1.22
LIMCH1-216ENST00000512820 ZNF732B4DXR9 585 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 PPP5D1E7EU14 171 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 SCGB1D1O95968 90 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 P2RY1P47900 373 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 FOXK1P85037 733 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 SSX2Q16385 188 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 ANKRD55Q3KP44 614 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 LIAT1Q6ZQX7 453 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 FLVCR1-AS1Q8TAF5 88 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 SLX1AQ9BQ83 275 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 WDR13Q9H1Z4 485 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 FAM206AQ9NX38 181 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 PSENENQ9NZ42 101 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 RNF150Q9ULK6 438 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 TP53TG5Q9Y2B4 290 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 A8MXE2 369 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 PGA3P0DJD8 388 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 GCH1P30793 250 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 SULT1A2P50226 295 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 GUSBP11Q6P575 273 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 LINC00696Q6ZRV3 163 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 NECAP1Q8NC96 275 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 OR10C1Q96KK4 312 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 RASL10BQ96S79 203 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 C5orf66Q9H5L9 145 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 DOCK6Q96HP0 2047 aa7.4□□□□□ -1.22
LIMCH1-216ENST00000512820 AP4M1O00189 453 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 MT-CO2P00403 227 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 RAB5AP20339 215 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 P2RY4P51582 365 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 GPM6AP51674 278 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 SELENOVP59797 346 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 SHISA5Q8N114 240 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 ADPRHL1Q8NDY3 354 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 OR2V1Q8NHB1 315 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 PPP1R35Q8TAP8 253 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 RPUSD4Q96CM3 377 aaKnown RBP7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 AQP7P3A6NL99 342 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 FAM166BA8MTA8 275 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 GEMIN2O14893 280 aaKnown RBP7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 CER1O95813 267 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 SMIM7Q9BQ49 75 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF251Q9BRH9 671 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 CHST5Q9GZS9 411 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 PCED1AQ9H1Q7 454 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 RIMS4Q9H426 269 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 C12orf49Q9H741 205 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 SLC2A9Q9NRM0 540 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 GBF1Q92538 1859 aa7.4□□□□□ -1.23
LIMCH1-216ENST00000512820 IGHV3-64DA0A0J9YX35 117 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 LOC101059948A0A1B0GTJ6 334 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 A0A1W2PPE2 198 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 RBFOX3A6NFN3 312 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 SIRPB1O00241 398 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 TGOLN2O43493 480 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 SCAF4O95104 1147 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 SMIM6P0DI80 62 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 PNLIPP16233 465 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 SULT1A1P50225 295 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 ARG2P78540 354 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 SMAD4Q13485 552 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 PABPC1L2AQ5JQF8 200 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 NCMAPQ5T1S8 102 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 OR2A2Q6IF42 318 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF573Q86YE8 665 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 DMBX1Q8NFW5 382 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 TECTBQ96PL2 329 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 USB1Q9BQ65 265 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 GCM1Q9NP62 436 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 UFSP2Q9NUQ7 469 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 RNF222A6NCQ9 220 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 CDRT15L2A8MXV6 281 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 GRPP07492 148 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 SEC11BP0C7V7 166 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 CALCRP30988 508 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 HTD2P86397 168 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 EIF4E3Q8N5X7 224 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 OR10D4PQ8NGN7 298 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 AQP10Q96PS8 301 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 TIMP4Q99727 224 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 ZNF391Q9UJN7 358 aa7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 DNASE2O00115 360 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-216ENST00000512820 IGKV3-11P04433 115 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms