RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 OR9G9P0C7N8 305 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 CPMP14384 443 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 FAHP16930 419 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 GPX2P18283 190 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 SRD5A1P18405 259 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 LSM11P83369 360 aaKnown RBP eCLIP3.21□□□□□ -1.9
USP53-205ENST00000509769 GPNMBQ14956 572 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 PTCRAQ6ISU1 281 aaPredicted RBP3.21□□□□□ -1.9
USP53-205ENST00000509769 C16orf82Q7Z2V1 217 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 ACVR1CQ8NER5 493 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 OR10G3Q8NGC4 313 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 OR4X1Q8NH49 305 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 FAM110BQ8TC76 370 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 ABHD5Q8WTS1 349 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 NDRG1Q92597 394 aaKnown RBP3.21□□□□□ -1.9
USP53-205ENST00000509769 RAX2Q96IS3 184 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 POM121L2Q96KW2 1035 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 NTPCRQ9BSD7 190 aaKnown RBP3.21□□□□□ -1.9
USP53-205ENST00000509769 WNT5BQ9H1J7 359 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 PRTFDC1Q9NRG1 225 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 GLRX2Q9NS18 164 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 CA10Q9NS85 328 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 KLRF1Q9NZS2 232 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 HECAQ9UBI9 543 aaPredicted RBP3.21□□□□□ -1.9
USP53-205ENST00000509769 DUSP13Q9UII6 198 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 TMED7Q9Y3B3 224 aa3.21□□□□□ -1.9
USP53-205ENST00000509769 CXorf49A8MYA2 514 aaPredicted RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 CDX4O14627 284 aaPredicted RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 DPM2O94777 84 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 APOMO95445 188 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 HPRT1P00492 218 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 ACYP1P07311 99 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 LGALS1P09382 135 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 SHC1P29353 583 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 GALNSP34059 522 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 DIO3P55073 304 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SEC13P55735 322 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 NTHL1P78549 312 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 PSG6Q00889 435 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 MFAP5Q13361 173 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 IKZF1Q13422 519 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 TMEM95Q3KNT9 176 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 POM121L1PQ3SYA9 428 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 GAGE13Q4V321 117 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 ACER2Q5QJU3 275 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SLC25A30Q5SVS4 291 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 C1orf194Q5T5A4 169 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 C9orf153Q5TBE3 101 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 TSPO2Q5TGU0 170 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 FOXB2Q5VYV0 432 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 RASL11AQ6T310 242 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SLC39A5Q6ZMH5 540 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 LIMS2Q7Z4I7 341 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 MRPL55Q7Z7F7 128 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 SYT9Q86SS6 491 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 FAM174AQ8TBP5 190 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 HIST1H2BAQ96A08 127 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 GALNT14Q96FL9 552 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 EGLN2Q96KS0 407 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 PRDM13Q9H4Q3 707 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 GEMIN7Q9H840 131 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 SALL4Q9UJQ4 1053 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SPEF2Q9C093 1822 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 LOC107984156A0A0G2JMH3 177 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 IGHV1-69-2A0A0G2JMI3 117 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 C9orf170A2RU37 121 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 DPRXA6NFQ7 191 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SERINC4A6NH21 518 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SNURFLB1AK76 121 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 LINC00587B1AMM8 73 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 MASP2O00187 686 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 CD5LO43866 347 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 GALR3O60755 368 aaPredicted RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 NDUFS6O75380 124 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 PEX11BO96011 259 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 P01737 135 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 NMBP08949 121 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 LGALS3P17931 250 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 CA7P43166 264 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SIGLEC14Q08ET2 396 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 ATXN8Q156A1 80 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SLC5A12Q1EHB4 618 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 OR10J3Q5JRS4 329 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 ARL17AQ8IVW1 177 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 THAP3Q8WTV1 239 aaPredicted RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 Q8WTZ3 238 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SLC25A43Q8WUT9 341 aaPredicted RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 SLC35A4Q96G79 324 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 GPR78Q96P69 363 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 HSD17B14Q9BPX1 270 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 NRSN2Q9GZP1 204 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SH3BGRL3Q9H299 93 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 GSTO2Q9H4Y5 243 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 CXorf36Q9H7Y0 433 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 BOKQ9UMX3 212 aaPredicted RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 ZNF443Q9Y2A4 671 aaPredicted RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 RBMY1BA6NDE4 496 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 RBMY1EA6NEQ0 496 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 FAM90A26D6RGX4 464 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms