RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 S100A13Q99584 98 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 IGLV3-12A0A075B6K2 115 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 ZNF850A8MQ14 1090 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 DUX1O43812 170 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 IGHV2-70P01814 119 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 S100A9P06702 114 aaKnown RBP10.34□□□□□ -0.75
UBE3D-206ENST00000505226 PRAMEF20Q5VT98 475 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 SYT13Q7L8C5 426 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 NAXEQ8NCW5 288 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 TSTD1Q8NFU3 115 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 H7C1Q1 480 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 GPR37O15354 613 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 GPR137BO60478 399 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 ZNF728P0DKX0 622 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 MSR1P21757 451 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 OTX1P32242 354 aaPredicted RBP10.34□□□□□ -0.75
UBE3D-206ENST00000505226 MTCP1P56278 107 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 NXPH1P58417 271 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 RPS23P62266 143 aaKnown RBP10.34□□□□□ -0.75
UBE3D-206ENST00000505226 RHBDD2Q6NTF9 364 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 ZNF574Q6ZN55 896 aaPredicted RBP10.34□□□□□ -0.75
UBE3D-206ENST00000505226 C5orf24Q7Z6I8 188 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 PP6455Q8WZ26 134 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 OR51M1Q9H341 326 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 LMAN1LQ9HAT1 526 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 SLC2A9Q9NRM0 540 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 LUZP4Q9P127 313 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 SDK2Q58EX2 2172 aa10.34□□□□□ -0.75
UBE3D-206ENST00000505226 IFITM10A6NMD0 228 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 PRH1P02810 166 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 MSX1P28360 303 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 LSM6P62312 80 aaKnown RBP10.33□□□□□ -0.76
UBE3D-206ENST00000505226 PIGYQ3MUY2 71 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 NKAIN1Q4KMZ8 207 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 TMEM182Q6ZP80 229 aaPredicted RBP10.33□□□□□ -0.76
UBE3D-206ENST00000505226 Q6ZSR3 168 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 LINC00469Q8N7U9 141 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 GALNT14Q96FL9 552 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 UCN2Q96RP3 112 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 SLC35B3Q9H1N7 401 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 NELFAQ9H3P2 528 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 AKIRIN1Q9H9L7 192 aaPredicted RBP10.33□□□□□ -0.76
UBE3D-206ENST00000505226 HSF4Q9ULV5 492 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 FRYQ5TBA9 3013 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 IGKV1-12A0A0C4DH73 117 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 FAM230AA0A1W2PPH8 454 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 DKK1O94907 266 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 IGKV1D-12P01611 117 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 ECI1P42126 302 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 SUCLG1P53597 346 aaKnown RBP10.33□□□□□ -0.76
UBE3D-206ENST00000505226 H3F3AP84243 136 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 KDF1Q8NAX2 398 aaPredicted RBP10.33□□□□□ -0.76
UBE3D-206ENST00000505226 GJC3Q8NFK1 279 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 HDGFL3Q9Y3E1 203 aa10.33□□□□□ -0.76
UBE3D-206ENST00000505226 K7N7A8 449 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 M0R135 149 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 GEMIN2O14893 280 aaKnown RBP10.32□□□□□ -0.76
UBE3D-206ENST00000505226 HIST1H3AP68431 136 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 PPA1Q15181 289 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 HIST2H3PS2Q5TEC6 136 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 LIAT1Q6ZQX7 453 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 HIST2H3AQ71DI3 136 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 COMMD1Q8N668 190 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 FAM213BQ8TBF2 198 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 ZNF799Q96GE5 643 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 PUS1Q9Y606 427 aaKnown RBP eCLIP10.32□□□□□ -0.76
UBE3D-206ENST00000505226 ZNF727A8MUV8 499 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 AP4M1O00189 453 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 RD3LP0DJH9 198 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 EIF3IQ13347 325 aaKnown RBP10.32□□□□□ -0.76
UBE3D-206ENST00000505226 HAGHQ16775 308 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 LRTM2Q8N967 370 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 SMRP1Q8NCR6 262 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 OR10AD1Q8NGE0 317 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 SLC22A8Q8TCC7 542 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 MALSU1Q96EH3 234 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 TP53RKQ96S44 253 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 RBM24Q9BX46 236 aaKnown RBP10.32□□□□□ -0.76
UBE3D-206ENST00000505226 CHRDQ9H2X0 955 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 NECAP2Q9NVZ3 263 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 KCNIP3Q9Y2W7 256 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 NSG1A0A0A6YYJ2 146 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 BORCS7-ASMTA0A0B4J1R7 106 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 LOC102725191A0A1B0GVB3 256 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 ATXN7O15265 892 aaPredicted RBP10.32□□□□□ -0.76
UBE3D-206ENST00000505226 YIF1AO95070 293 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 CHATP28329 748 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 STARD6P59095 220 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 ABCA11PQ4W5N1 156 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 CDPF1Q6NVV7 123 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 ZNF565Q8N9K5 539 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 OR1J1Q8NGS3 322 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 SLC39A7Q92504 469 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 RASL10BQ96S79 203 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 KCNJ16Q9NPI9 418 aa10.32□□□□□ -0.76
UBE3D-206ENST00000505226 CDRT15L2A8MXV6 281 aa10.31□□□□□ -0.76
UBE3D-206ENST00000505226 CELA2AP08217 269 aa10.31□□□□□ -0.76
UBE3D-206ENST00000505226 GLB1P16278 677 aa10.31□□□□□ -0.76
UBE3D-206ENST00000505226 EIF2S3P41091 472 aaKnown RBP10.31□□□□□ -0.76
UBE3D-206ENST00000505226 ZNF133P52736 654 aaPredicted RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms