RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 NEIL1Q96FI4 390 aaPredicted RBP15.04■□□□□ -0
SQSTM1-209ENST00000504627 TECTBQ96PL2 329 aa15.04■□□□□ -0
SQSTM1-209ENST00000504627 OR8B2Q96RD0 313 aa15.04■□□□□ -0
SQSTM1-209ENST00000504627 TMEM246Q9BRR3 403 aa15.04■□□□□ -0
SQSTM1-209ENST00000504627 NUP50Q9UKX7 468 aa15.04■□□□□ -0
SQSTM1-209ENST00000504627 A0A1B0GWJ7 208 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 ANXA2P2A6NMY6 339 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 SULT1B1O43704 296 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 PMELP40967 661 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 CD200P41217 278 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 ZNF404Q494X3 552 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 FAM201AQ5SY85 155 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 TMEM42Q69YG0 159 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 OR1M1Q8NGA1 313 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 KCTD12Q96CX2 325 aaKnown RBP15.03■□□□□ -0
SQSTM1-209ENST00000504627 ADAT1Q9BUB4 502 aaKnown RBP15.03■□□□□ -0
SQSTM1-209ENST00000504627 BARHL1Q9BZE3 327 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 NXF2Q9GZY0 626 aaKnown RBP15.03■□□□□ -0
SQSTM1-209ENST00000504627 FN3KRPQ9HA64 309 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 TMEM138Q9NPI0 162 aa15.03■□□□□ -0
SQSTM1-209ENST00000504627 SMIM30A4D0T7 59 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 GMDSO60547 372 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 CLPXO76031 633 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 BDKRB2P30411 391 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 OR10A3P58181 314 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 DYNC1I2Q13409 638 aaKnown RBP15.02■□□□□ -0
SQSTM1-209ENST00000504627 CNN3Q15417 329 aaKnown RBP15.02■□□□□ -0
SQSTM1-209ENST00000504627 CLVS2Q5SYC1 327 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 NR2C2APQ86WQ0 139 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 OR51A2Q8NGJ7 313 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 OR13C9Q8NGT0 318 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 Q8TCH9 128 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 DVL3Q92997 716 aaPredicted RBP15.02■□□□□ -0
SQSTM1-209ENST00000504627 NEK6Q9HC98 313 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 CLN8Q9UBY8 286 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 AK6Q9Y3D8 172 aaKnown RBP15.02■□□□□ -0
SQSTM1-209ENST00000504627 V9GY05 133 aa15.02■□□□□ -0
SQSTM1-209ENST00000504627 A0A075B6Q4 140 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 AIPO00170 330 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 FSTL3O95633 263 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 MAS1P04201 325 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 PITPNBP48739 271 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 MPPED2Q15777 294 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 GLT8D1Q68CQ7 371 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 LINC00299Q6ZSB3 139 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 CDH26Q8IXH8 852 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 SIGLECL1Q8N7X8 197 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 C3orf56Q8N813 242 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 ZDHHC22Q8N966 263 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 BOLLQ8N9W6 283 aaKnown RBP15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 C19orf18Q8NEA5 215 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 MCFD2Q8NI22 146 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 SPSB1Q96BD6 273 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 FOXRED1Q96CU9 486 aaPredicted RBP15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 GFI1Q99684 422 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 MS4A7Q9GZW8 240 aaPredicted RBP15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 MMP27Q9H306 513 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 ESM1Q9NQ30 184 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 MRPL15Q9P015 296 aaKnown RBP15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 RNF7Q9UBF6 113 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 ZNF69Q9UC07 566 aa15.01□□□□□ -0.01
SQSTM1-209ENST00000504627 IGHV2-70DA0A0C4DH43 119 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15□□□□□ -0.01
SQSTM1-209ENST00000504627 TMEM89A2RUT3 159 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 A6NIN4 97 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 IFITM5A6NNB3 132 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 CST4P01036 141 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 ALDOBP05062 364 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 CD37P11049 281 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 ATF1P18846 271 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 CD80P33681 288 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 RANBP1P43487 201 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 CAV3P56539 151 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 PAX8Q06710 450 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 MZT1Q08AG7 82 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 KLF17Q5JT82 389 aaPredicted RBP15□□□□□ -0.01
SQSTM1-209ENST00000504627 DDI2Q5TDH0 399 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 DCDC5Q6ZRR9 648 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 SPERTQ8NA61 448 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 RAB40AQ8WXH6 277 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 ACOT12Q8WYK0 555 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 CPNE2Q96FN4 548 aaPredicted RBP15□□□□□ -0.01
SQSTM1-209ENST00000504627 PAPOLGQ9BWT3 736 aaKnown RBP15□□□□□ -0.01
SQSTM1-209ENST00000504627 SMURF1Q9HCE7 757 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 ABCB9Q9NP78 766 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 NBEAL1Q6ZS30 2694 aa15□□□□□ -0.01
SQSTM1-209ENST00000504627 ANKRD30BLA7E2S9 258 aa14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 GRPP07492 148 aa14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 OCMP0CE72 109 aaPredicted RBP14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 PRKACBP22694 351 aa14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 COMPP49747 757 aaPredicted RBP14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 UBA52P62987 128 aaKnown RBP14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 KCNJ8Q15842 424 aa14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 SFRP4Q6FHJ7 346 aaPredicted RBP14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 LYPD2Q6UXB3 125 aa14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 NUDT16L1Q9BRJ7 211 aaKnown RBP14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 UQCC2Q9BRT2 126 aa14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 C14orf119Q9NWQ9 140 aa14.99□□□□□ -0.01
SQSTM1-209ENST00000504627 IGHV3OR16-10A0A075B7F0 116 aa14.98□□□□□ -0.01
SQSTM1-209ENST00000504627 IGKV1-9A0A0C4DH69 117 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms