RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TMEM33P57088 247 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 FAM71E2Q8N5Q1 922 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 OR5L1Q8NGL2 311 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 CD300LFQ8TDQ1 290 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 GLYATL2Q8WU03 294 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 URM1Q9BTM9 101 aaKnown RBP14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 NMES1Q9C002 83 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 LIME1Q9H400 295 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 TCFL5Q9UL49 500 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 TRBV23-1A0A0A0MS06 115 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 F8VVB4 439 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 F8VWA3 439 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 PRH1P02810 166 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 OR13C7P0DN81 318 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 ZNF708P17019 499 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 CARD18P57730 90 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 SPINK14Q6IE38 97 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 C1orf210Q8IVY1 113 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 ABHD3Q8WU67 409 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 SFT2D1Q8WV19 159 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 FBLN5Q9UBX5 448 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 LAMA5O15230 3695 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 ARHGAP21Q5T5U3 1957 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 ZNF850A8MQ14 1090 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 MTRF1O75570 445 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 GSTP1P09211 210 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 JMJD7P0C870 316 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 HKR1P10072 659 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 DUSP3P51452 185 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 ZNF84P51523 738 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 MEX3BQ6ZN04 569 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 GGNQ86UU5 652 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 OR11L1Q8NGX0 322 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 RHBDD1Q8TEB9 315 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 C2orf50Q96LR7 162 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 PECRQ9BY49 303 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 A0A1W2PPH5 198 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 SGCEO43556 437 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 LCATP04180 440 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 CLDN15P56746 228 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 SRYQ05066 204 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 SRSF4Q08170 494 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 SLC23A3Q6PIS1 610 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 OR5T2Q8NGG2 359 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 CT55Q8WUE5 264 aa14.37□□□□□ -0.11
CCDC88B-210ENST00000494566 BOD1L1Q8NFC6 3051 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 IGLV3-1P01715 115 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 ZNF32P17041 273 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 HOXA6P31267 233 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 MIDNQ504T8 468 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 ADAM5Q6NVV9 412 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 UQCC3Q6UW78 93 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 OR10D3Q8NH80 312 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 HES7Q9BYE0 225 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 CHST5Q9GZS9 411 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 BIN3Q9NQY0 253 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 PADI1Q9ULC6 663 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 C14orf166Q9Y224 244 aaKnown RBP14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 LOXL2Q9Y4K0 774 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 V9GYS6 101 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 LRRC3CA6NJW4 275 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 SCGNO76038 276 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 VAMP5O95183 116 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 PRF1P14222 555 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 HLA-GP17693 338 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 FKBP2P26885 142 aaKnown RBP14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 MTCP1P56278 107 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 TAS2R31P59538 309 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 SPACA1Q9HBV2 294 aa14.36□□□□□ -0.11
CCDC88B-210ENST00000494566 IGKV1-27A0A075B6S5 117 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 HSPB6O14558 160 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 S100A6P06703 90 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 ACAA1P09110 424 aaPredicted RBP14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 GDF1P27539 372 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 THBS4P35443 961 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 CBX5P45973 191 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 MEOX2P50222 304 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 TRA2AQ13595 282 aaKnown RBP eCLIP14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 ACER2Q5QJU3 275 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 GGNBP1Q5YKI7 109 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 DHRS7BQ6IAN0 325 aaPredicted RBP14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 FAM180AQ6UWF9 173 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 LYZL2Q7Z4W2 148 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 SULF2Q8IWU5 870 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 DEFB123Q8N688 67 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 POC1AQ8NBT0 407 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 ADAMTS17Q8TE56 1095 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 SLAMF9Q96A28 289 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 KIRREL1Q96J84 757 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 COA4Q9NYJ1 87 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 KIAA2026Q5HYC2 2103 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 LINC00587B1AMM8 73 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 MSTNO14793 375 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 YKT6O15498 198 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 CTSSP25774 331 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 GSK3AP49840 483 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 RAC3P60763 192 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 CYCSP99999 105 aaKnown RBP14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 NHLH2Q02577 135 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms