RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 INSM1Q01101 510 aaPredicted RBP9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC17A1Q14916 467 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SPATA46Q5T0L3 261 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ATPAF1Q5TC12 328 aaPredicted RBP9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 VHLLQ6RSH7 139 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FBXW12Q6X9E4 464 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMPPEQ6ZT21 453 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FJX1Q86VR8 437 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 NR2C2APQ86WQ0 139 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM229BQ8NBD8 167 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR2G3Q8NGZ4 309 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF385AQ96PM9 386 aaKnown RBP9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC5A7Q9GZV3 580 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PCED1AQ9H1Q7 454 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 C1orf123Q9NWV4 160 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HS3ST3B1Q9Y662 390 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PTBP3O95758 552 aaKnown RBP9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MT-CO3P00414 261 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CST4P01036 141 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 IGKV3-11P04433 115 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FAHP16930 419 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GNRHRP30968 328 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 UBE2V2Q15819 145 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ADIRFQ15847 76 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ADGRE4PQ86SQ3 457 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OTOSQ8NHW6 89 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FAM210BQ96KR6 192 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MED13Q9UHV7 2174 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 A0A0U1RQK1 487 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 C9orf170A2RU37 121 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 RAB27BO00194 218 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TCF21O43680 179 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 IGLV3-19P01714 112 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CD81P60033 236 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TAF9Q16594 264 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 IQCJQ1A5X6 159 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MEX3BQ6ZN04 569 aaKnown RBP9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR5AS1Q8N127 324 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 NECAP1Q8NC96 275 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 METTL9Q9H1A3 318 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GPR173Q9NS66 373 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 POMT1Q9Y6A1 747 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ARPC3O15145 178 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 RBMXL2O75526 392 aaKnown RBP9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MST1P26927 711 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC35A1P78382 337 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MRPS34P82930 218 aaKnown RBP9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 DHODHQ02127 395 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PMPCAQ10713 525 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC10A1Q14973 349 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FAM208BQ5VWN6 2430 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ANKRD16Q6P6B7 361 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM123Q8N131 208 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR5D14Q8NGL3 314 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR2Y1Q8NGV0 311 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR52N5Q8NH56 324 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ABHD3Q8WU67 409 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 C2orf50Q96LR7 162 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 IP6K3Q96PC2 410 aa9.49□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZFP92A6NM28 416 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CTAG2O75638 210 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 WNT11O96014 354 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC25A4P12235 298 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 DUSP1P28562 367 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 EFNA3P52797 238 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PLAURQ03405 335 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 RAB32Q13637 225 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 EXT1Q16394 746 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 DEFB109BQ30KR1 87 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM244Q5VVB8 128 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 DHRS11Q6UWP2 260 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 C20orf196Q8IYI0 205 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GTF3AQ92664 365 aaKnown RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 NMNAT2Q9BZQ4 307 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF442Q9H7R0 627 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 KIAA2026Q5HYC2 2103 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ANKUB1A6NFN9 424 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 DBX1A6NMT0 343 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SDCBPO00560 298 aaPredicted RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HEXAP06865 529 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ALOX5APP20292 161 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF93P35789 620 aaPredicted RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 NOVA1P51513 510 aaKnown RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PTTG1IPP53801 180 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF121P58317 390 aaPredicted RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PLP2Q04941 152 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR5I1Q13606 314 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 IL11RAQ14626 422 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SHBQ15464 509 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF429Q86V71 674 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC26A10Q8NG04 563 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HOXB13Q92826 284 aaPredicted RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TVP23CQ96ET8 276 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 AP1S3Q96PC3 154 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 UBE2J1Q9Y385 318 aaPredicted RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 IGKV1D-43A0A0B4J1Z2 117 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TSPAN2O60636 221 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ADAP1O75689 374 aa9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF16P17020 682 aaPredicted RBP9.48□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 THBS2P35442 1172 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms